Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 SNORD115-39-201ENST00000363694 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-4-201ENST00000363810 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-16-201ENST00000363887 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-6-201ENST00000363942 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-42-201ENST00000364273 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-15-201ENST00000364809 81 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-1-201ENST00000364961 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-26-201ENST00000365067 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-10-201ENST00000365073 81 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-43-201ENST00000365503 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 RNU6-81P-201ENST00000365608 104 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-36-201ENST00000365629 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 RNU6-1189P-201ENST00000383958 107 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 Y_RNA.420-201ENST00000384043 110 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD28B-201ENST00000390993 75 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 Y_RNA.586-201ENST00000391146 98 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 RNU6-257P-201ENST00000410238 98 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORA25.12-201ENST00000516202 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORA18.4-201ENST00000516440 124 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 RNU6-165P-201ENST00000517170 99 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 AP003484.1-201ENST00000530974 250 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 CYP3A52P-201ENST00000563326 91 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 SNORD115-40-201ENST00000606510 82 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 MIR8065-201ENST00000620577 100 ntBASIC1.33□□□□□ -2.2
CLCN3P51790 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.33□□□□□ -2.2
CLCN3P51790 AC010332.2-201ENST00000613083 1904 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 SNORA40.5-201ENST00000391061 128 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 SNORD37.2-201ENST00000391075 66 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 Y_RNA.584-201ENST00000391090 114 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 RNU6-460P-201ENST00000391158 108 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 MTND4LP9-201ENST00000427694 174 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.32□□□□□ -2.2
CLCN3P51790 RPS29P23-201ENST00000458635 123 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 RPS26P48-201ENST00000491713 339 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 SNORA31.4-201ENST00000516049 129 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 RNA5SP272-201ENST00000516095 111 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 RNU7-181P-201ENST00000517234 74 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 MIR548AR-201ENST00000582191 57 ntBASIC1.32□□□□□ -2.2
CLCN3P51790 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
CLCN3P51790 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.32□□□□□ -2.2
CLCN3P51790 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CLCN3P51790 MTND5P32-201ENST00000560711 1802 ntBASIC1.31□□□□□ -2.2
CLCN3P51790 Y_RNA.343-201ENST00000365354 112 ntBASIC1.31□□□□□ -2.2
CLCN3P51790 MIR513C-201ENST00000401352 84 ntBASIC1.31□□□□□ -2.2
CLCN3P51790 AL603914.1-201ENST00000401964 204 ntBASIC1.31□□□□□ -2.2
CLCN3P51790 RNU6-1054P-201ENST00000411293 104 ntBASIC1.31□□□□□ -2.2
CLCN3P51790 RPL39P39-201ENST00000455840 151 ntBASIC1.31□□□□□ -2.2
CLCN3P51790 Y_RNA.686-201ENST00000516548 134 ntBASIC1.31□□□□□ -2.2
CLCN3P51790 AC090821.2-201ENST00000523552 176 ntBASIC1.31□□□□□ -2.2
CLCN3P51790 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.31□□□□□ -2.2
CLCN3P51790 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CLCN3P51790 RNU4-61P-201ENST00000411243 107 ntBASIC1.3□□□□□ -2.2
CLCN3P51790 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.3□□□□□ -2.2
CLCN3P51790 Y_RNA.651-201ENST00000459380 103 ntBASIC1.3□□□□□ -2.2
CLCN3P51790 RNU7-43P-201ENST00000516554 64 ntBASIC1.3□□□□□ -2.2
CLCN3P51790 RNU6-1149P-201ENST00000516810 97 ntBASIC1.3□□□□□ -2.2
CLCN3P51790 SNORA18.7-201ENST00000516910 131 ntBASIC1.3□□□□□ -2.2
CLCN3P51790 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
CLCN3P51790 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.29□□□□□ -2.2
CLCN3P51790 MIR96-201ENST00000362288 78 ntBASIC1.29□□□□□ -2.2
CLCN3P51790 SNORD114-27-201ENST00000363766 70 ntBASIC1.29□□□□□ -2.2
CLCN3P51790 SNORA20-201ENST00000384662 132 ntBASIC1.29□□□□□ -2.2
CLCN3P51790 TMSB4XP3-201ENST00000445144 114 ntBASIC1.29□□□□□ -2.2
CLCN3P51790 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.29□□□□□ -2.2
CLCN3P51790 RNU6-998P-201ENST00000515894 101 ntBASIC1.29□□□□□ -2.2
CLCN3P51790 SNORD111.1-201ENST00000516421 86 ntBASIC1.29□□□□□ -2.2
CLCN3P51790 AL161722.3-201ENST00000605789 2983 ntBASIC1.29□□□□□ -2.2
CLCN3P51790 RNU6-508P-201ENST00000363231 103 ntBASIC1.28□□□□□ -2.2
CLCN3P51790 RNU6-915P-201ENST00000364943 103 ntBASIC1.28□□□□□ -2.2
CLCN3P51790 SNORA1.2-201ENST00000365189 134 ntBASIC1.28□□□□□ -2.2
CLCN3P51790 SNORA27-201ENST00000384323 126 ntBASIC1.28□□□□□ -2.2
CLCN3P51790 Y_RNA.537-201ENST00000384626 109 ntBASIC1.28□□□□□ -2.2
CLCN3P51790 snoU13.25-201ENST00000458945 104 ntBASIC1.28□□□□□ -2.2
CLCN3P51790 MIR3121-201ENST00000579680 77 ntBASIC1.28□□□□□ -2.2
CLCN3P51790 MIR6504-201ENST00000613520 61 ntBASIC1.28□□□□□ -2.2
CLCN3P51790 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
CLCN3P51790 Y_RNA.241-201ENST00000364470 117 ntBASIC1.27□□□□□ -2.21
CLCN3P51790 Y_RNA.370-201ENST00000365589 108 ntBASIC1.27□□□□□ -2.21
CLCN3P51790 SNORA40-201ENST00000388090 126 ntBASIC1.27□□□□□ -2.21
CLCN3P51790 RNU6-955P-201ENST00000410497 104 ntBASIC1.27□□□□□ -2.21
CLCN3P51790 RNU7-96P-201ENST00000459535 64 ntBASIC1.27□□□□□ -2.21
CLCN3P51790 RPS29P24-201ENST00000486345 171 ntBASIC1.27□□□□□ -2.21
CLCN3P51790 AP001328.1-201ENST00000528550 176 ntBASIC1.27□□□□□ -2.21
CLCN3P51790 MIR4764-201ENST00000580680 88 ntBASIC1.27□□□□□ -2.21
CLCN3P51790 U7.2-201ENST00000607576 63 ntBASIC1.27□□□□□ -2.21
CLCN3P51790 RNU6-349P-201ENST00000362402 107 ntBASIC1.26□□□□□ -2.21
CLCN3P51790 RNU6-309P-201ENST00000364573 106 ntBASIC1.26□□□□□ -2.21
CLCN3P51790 MIR150-201ENST00000385048 84 ntBASIC1.26□□□□□ -2.21
CLCN3P51790 RNU7-73P-201ENST00000458743 63 ntBASIC1.26□□□□□ -2.21
CLCN3P51790 AP003716.2-201ENST00000528260 108 ntBASIC1.26□□□□□ -2.21
CLCN3P51790 MIR3192-201ENST00000584920 77 ntBASIC1.26□□□□□ -2.21
CLCN3P51790 AL096861.1-201ENST00000610899 123 ntBASIC1.26□□□□□ -2.21
CLCN3P51790 AC091932.4-201ENST00000623386 200 ntBASIC1.26□□□□□ -2.21
CLCN3P51790 Y_RNA.224-201ENST00000364308 111 ntBASIC1.25□□□□□ -2.21
CLCN3P51790 AC245047.7-201ENST00000440265 293 ntBASIC1.25□□□□□ -2.21
CLCN3P51790 RNU7-41P-201ENST00000515917 61 ntBASIC1.25□□□□□ -2.21
CLCN3P51790 RNU6-789P-201ENST00000517105 102 ntBASIC1.25□□□□□ -2.21
CLCN3P51790 MIR4791-201ENST00000607666 84 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms