Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
HMGB1P09429 Y_RNA.164-201ENST00000363709 102 ntBASIC0.66□□□□□ -2.3
HMGB1P09429 Y_RNA.440-201ENST00000384120 114 ntBASIC0.66□□□□□ -2.3
HMGB1P09429 RNU7-102P-201ENST00000458948 62 ntBASIC0.66□□□□□ -2.3
HMGB1P09429 RNA5SP153-201ENST00000516498 76 ntBASIC0.66□□□□□ -2.3
HMGB1P09429 Y_RNA.701-201ENST00000516812 110 ntBASIC0.66□□□□□ -2.3
HMGB1P09429 RNU7-156P-201ENST00000517214 74 ntBASIC0.66□□□□□ -2.3
HMGB1P09429 AC044792.1-201ENST00000593294 196 ntBASIC0.66□□□□□ -2.3
HMGB1P09429 MIR6788-201ENST00000618842 66 ntBASIC0.66□□□□□ -2.3
HMGB1P09429 RNY3P5-201ENST00000384127 102 ntBASIC0.65□□□□□ -2.31
HMGB1P09429 RNU6-1228P-201ENST00000391014 107 ntBASIC0.65□□□□□ -2.31
HMGB1P09429 Y_RNA.590-201ENST00000410140 107 ntBASIC0.65□□□□□ -2.31
HMGB1P09429 RNU6-651P-201ENST00000411040 105 ntBASIC0.65□□□□□ -2.31
HMGB1P09429 SNORA68.3-201ENST00000515906 83 ntBASIC0.65□□□□□ -2.31
HMGB1P09429 RNU6-453P-201ENST00000516819 85 ntBASIC0.65□□□□□ -2.31
HMGB1P09429 AC008608.1-201ENST00000603910 127 ntBASIC0.65□□□□□ -2.31
HMGB1P09429 AC092634.7-201ENST00000621022 103 ntBASIC0.65□□□□□ -2.31
HMGB1P09429 Y_RNA.351-201ENST00000365436 96 ntBASIC0.64□□□□□ -2.31
HMGB1P09429 MIR548J-201ENST00000408833 112 ntBASIC0.64□□□□□ -2.31
HMGB1P09429 MIR4714-201ENST00000580728 77 ntBASIC0.64□□□□□ -2.31
HMGB1P09429 AP001282.2-201ENST00000616149 309 ntBASIC0.64□□□□□ -2.31
HMGB1P09429 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
HMGB1P09429 MIR499A-201ENST00000384903 122 ntBASIC0.63□□□□□ -2.31
HMGB1P09429 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.63□□□□□ -2.31
HMGB1P09429 snoU2_19.4-201ENST00000364329 80 ntBASIC0.62□□□□□ -2.31
HMGB1P09429 Y_RNA.354-201ENST00000365448 111 ntBASIC0.62□□□□□ -2.31
HMGB1P09429 SNORA1-201ENST00000384107 130 ntBASIC0.62□□□□□ -2.31
HMGB1P09429 RNU6-1109P-201ENST00000391187 107 ntBASIC0.62□□□□□ -2.31
HMGB1P09429 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.62□□□□□ -2.31
HMGB1P09429 RPL39P25-201ENST00000449384 154 ntBASIC0.62□□□□□ -2.31
HMGB1P09429 RNU7-45P-201ENST00000459460 63 ntBASIC0.62□□□□□ -2.31
HMGB1P09429 Y_RNA.512-201ENST00000384518 102 ntBASIC0.61□□□□□ -2.31
HMGB1P09429 MIR616-201ENST00000385293 97 ntBASIC0.61□□□□□ -2.31
HMGB1P09429 AC090897.1-201ENST00000580909 226 ntBASIC0.61□□□□□ -2.31
HMGB1P09429 MIR151B-201ENST00000584249 96 ntBASIC0.61□□□□□ -2.31
HMGB1P09429 U2.14-201ENST00000615943 113 ntBASIC0.61□□□□□ -2.31
HMGB1P09429 RNU6-238P-201ENST00000363313 106 ntBASIC0.6□□□□□ -2.31
HMGB1P09429 Y_RNA.604-201ENST00000410574 102 ntBASIC0.6□□□□□ -2.31
HMGB1P09429 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.6□□□□□ -2.31
HMGB1P09429 SNORA25.12-201ENST00000516202 82 ntBASIC0.6□□□□□ -2.31
HMGB1P09429 RNU6-635P-201ENST00000516651 102 ntBASIC0.6□□□□□ -2.31
HMGB1P09429 MIR3129-201ENST00000581095 76 ntBASIC0.6□□□□□ -2.31
HMGB1P09429 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.6□□□□□ -2.31
HMGB1P09429 MT-TF-201ENST00000387314 71 ntBASIC0.59□□□□□ -2.31
HMGB1P09429 SNORA79-201ENST00000408376 140 ntBASIC0.59□□□□□ -2.31
HMGB1P09429 MIR6717-201ENST00000622747 73 ntBASIC0.59□□□□□ -2.31
HMGB1P09429 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.59□□□□□ -2.31
HMGB1P09429 Y_RNA.23-201ENST00000362496 106 ntBASIC0.58□□□□□ -2.32
HMGB1P09429 SNORD18A-201ENST00000363753 72 ntBASIC0.58□□□□□ -2.32
HMGB1P09429 RNA5SP117-201ENST00000365294 118 ntBASIC0.58□□□□□ -2.32
HMGB1P09429 RNU6-342P-201ENST00000384521 104 ntBASIC0.58□□□□□ -2.32
HMGB1P09429 RNA5SP237-201ENST00000410414 113 ntBASIC0.58□□□□□ -2.32
HMGB1P09429 RNA5SP261-201ENST00000410536 106 ntBASIC0.58□□□□□ -2.32
HMGB1P09429 AC092628.1-201ENST00000436250 252 ntBASIC0.58□□□□□ -2.32
HMGB1P09429 SNORD2.1-201ENST00000458762 69 ntBASIC0.58□□□□□ -2.32
HMGB1P09429 RNU6-1153P-201ENST00000516760 105 ntBASIC0.58□□□□□ -2.32
HMGB1P09429 MIR5000-201ENST00000577717 103 ntBASIC0.58□□□□□ -2.32
HMGB1P09429 RNA5SP347-201ENST00000362445 119 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 Y_RNA.82-201ENST00000363000 102 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 Y_RNA.92-201ENST00000363043 102 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 RNA5SP499-201ENST00000363982 119 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 Y_RNA.235-201ENST00000364412 102 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 Y_RNA.306-201ENST00000365015 102 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 Y_RNA.312-201ENST00000365089 102 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 Y_RNA.322-201ENST00000365151 102 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 SNORA50A-201ENST00000384225 134 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 SNORD100-201ENST00000408573 76 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 SNORD93-201ENST00000408813 74 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.57□□□□□ -2.32
HMGB1P09429 AL157398.1-201ENST00000452981 186 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 Y_RNA.650-201ENST00000459002 102 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 AC002350.1-201ENST00000490759 375 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 Y_RNA.777-201ENST00000516982 102 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 AL442663.2-201ENST00000554385 511 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 SNORD92-201ENST00000585078 85 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 Y_RNA.771-201ENST00000598668 102 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 AL365265.1-201ENST00000621045 234 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 Y_RNA.789-201ENST00000622480 102 ntBASIC0.57□□□□□ -2.32
HMGB1P09429 MIRLET7D-201ENST00000362263 87 ntBASIC0.56□□□□□ -2.32
HMGB1P09429 MIR30D-201ENST00000362283 70 ntBASIC0.56□□□□□ -2.32
HMGB1P09429 MIR563-201ENST00000385080 79 ntBASIC0.56□□□□□ -2.32
HMGB1P09429 MIR1302-6-201ENST00000408466 90 ntBASIC0.56□□□□□ -2.32
HMGB1P09429 MTCYBP6-201ENST00000441810 138 ntBASIC0.56□□□□□ -2.32
HMGB1P09429 RNU7-80P-201ENST00000459562 61 ntBASIC0.56□□□□□ -2.32
HMGB1P09429 MTATP8P1-201ENST00000467115 207 ntBASIC0.56□□□□□ -2.32
HMGB1P09429 AC097639.2-201ENST00000603159 172 ntBASIC0.56□□□□□ -2.32
HMGB1P09429 U6.104-201ENST00000637979 90 ntBASIC0.56□□□□□ -2.32
HMGB1P09429 AL596211.1-201ENST00000569873 2277 ntBASIC0.55□□□□□ -2.32
HMGB1P09429 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.55□□□□□ -2.32
HMGB1P09429 SNORD71-201ENST00000411292 86 ntBASIC0.55□□□□□ -2.32
HMGB1P09429 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.55□□□□□ -2.32
HMGB1P09429 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.55□□□□□ -2.32
HMGB1P09429 Y_RNA.416-201ENST00000384014 113 ntBASIC0.54□□□□□ -2.32
HMGB1P09429 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.54□□□□□ -2.32
HMGB1P09429 RNA5SP517-201ENST00000364724 117 ntBASIC0.53□□□□□ -2.32
HMGB1P09429 RNU6-728P-201ENST00000365375 104 ntBASIC0.53□□□□□ -2.32
HMGB1P09429 AC114737.2-201ENST00000421583 173 ntBASIC0.53□□□□□ -2.32
HMGB1P09429 RNU6-561P-201ENST00000516222 102 ntBASIC0.53□□□□□ -2.32
HMGB1P09429 RNU6-448P-201ENST00000517052 107 ntBASIC0.53□□□□□ -2.32
HMGB1P09429 RNU6-1223P-201ENST00000517124 104 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 208.4 ms