Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 RNU2-7P-201ENST00000410794 178 ntBASIC3.21□□□□□ -1.89
ZC3H4Q9UPT8 RNU7-34P-201ENST00000459394 64 ntBASIC3.21□□□□□ -1.89
ZC3H4Q9UPT8 RNU6ATAC17P-201ENST00000516074 71 ntBASIC3.21□□□□□ -1.89
ZC3H4Q9UPT8 RNU6-958P-201ENST00000516995 106 ntBASIC3.21□□□□□ -1.89
ZC3H4Q9UPT8 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC3.21□□□□□ -1.9
ZC3H4Q9UPT8 Y_RNA.466-201ENST00000384294 113 ntBASIC3.2□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-644P-201ENST00000391155 98 ntBASIC3.2□□□□□ -1.9
ZC3H4Q9UPT8 RPS12P2-201ENST00000439728 269 ntBASIC3.2□□□□□ -1.9
ZC3H4Q9UPT8 RNA5SP320-201ENST00000516263 124 ntBASIC3.2□□□□□ -1.9
ZC3H4Q9UPT8 RNA5SP33-201ENST00000516687 98 ntBASIC3.2□□□□□ -1.9
ZC3H4Q9UPT8 AC103810.6-201ENST00000606708 136 ntBASIC3.2□□□□□ -1.9
ZC3H4Q9UPT8 AC012531.4-201ENST00000616509 177 ntBASIC3.2□□□□□ -1.9
ZC3H4Q9UPT8 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.2□□□□□ -1.9
ZC3H4Q9UPT8 MIR452-201ENST00000385020 85 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 AC093850.1-201ENST00000454121 251 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 RPL23AP63-201ENST00000498752 471 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 MIR3152-201ENST00000579801 74 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 U7.3-201ENST00000616123 62 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 Y_RNA.17-201ENST00000362433 111 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 SNORA22.1-201ENST00000362701 134 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-170P-201ENST00000362832 104 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 RNY1P10-201ENST00000363268 113 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 RNA5SP99-201ENST00000364020 114 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 SNORA18-201ENST00000384416 132 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 RNU1-148P-201ENST00000384472 162 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 RNU7-53P-201ENST00000516705 60 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 AC022254.1-201ENST00000567857 235 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 FO624990.1-201ENST00000636373 85 ntBASIC3.19□□□□□ -1.9
ZC3H4Q9UPT8 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-616P-201ENST00000384353 107 ntBASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 MIR136-201ENST00000385207 82 ntBASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 Y_RNA.593-201ENST00000410292 98 ntBASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 AC004941.2-201ENST00000427009 228 ntBASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 Y_RNA.659-201ENST00000515994 113 ntBASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-1258P-201ENST00000516911 111 ntBASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 MIR548AE2-201ENST00000583456 67 ntBASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 MIR4791-201ENST00000607666 84 ntBASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 AL353997.5-201ENST00000618886 171 ntBASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 MIR7111-201ENST00000619751 72 ntBASIC3.18□□□□□ -1.9
ZC3H4Q9UPT8 AC007336.1-201ENST00000576365 3828 ntBASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 Y_RNA.4-201ENST00000362333 112 ntBASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 RNA5SP393-201ENST00000363423 117 ntBASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 Y_RNA.470-201ENST00000384307 117 ntBASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-1031P-201ENST00000384773 107 ntBASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-1275P-201ENST00000391087 107 ntBASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 RNU2-13P-201ENST00000515909 113 ntBASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 MIR548Z-201ENST00000584743 97 ntBASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 SNORD14A-201ENST00000606526 91 ntBASIC3.17□□□□□ -1.9
ZC3H4Q9UPT8 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 SNORA32-201ENST00000384072 121 ntBASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-1319P-201ENST00000390855 104 ntBASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-747P-201ENST00000390928 104 ntBASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-241P-201ENST00000391148 104 ntBASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-177P-201ENST00000411257 104 ntBASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 AC011753.1-201ENST00000451001 220 ntBASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 RPS29P29-201ENST00000456396 171 ntBASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 RNU6-638P-201ENST00000516582 104 ntBASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 RNA5SP137-201ENST00000516833 135 ntBASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.16□□□□□ -1.9
ZC3H4Q9UPT8 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.15□□□□□ -1.9
ZC3H4Q9UPT8 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
ZC3H4Q9UPT8 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
ZC3H4Q9UPT8 RNY1P1-201ENST00000364372 112 ntBASIC3.15□□□□□ -1.91
ZC3H4Q9UPT8 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
ZC3H4Q9UPT8 SNORD45B-201ENST00000364617 72 ntBASIC3.14□□□□□ -1.91
ZC3H4Q9UPT8 RNU6-679P-201ENST00000391003 106 ntBASIC3.14□□□□□ -1.91
ZC3H4Q9UPT8 RNA5SP261-201ENST00000410536 106 ntBASIC3.14□□□□□ -1.91
ZC3H4Q9UPT8 RNU6-1190P-201ENST00000410811 104 ntBASIC3.14□□□□□ -1.91
ZC3H4Q9UPT8 MRPL35P3-201ENST00000421557 364 ntBASIC3.14□□□□□ -1.91
ZC3H4Q9UPT8 AC003982.1-202ENST00000469928 248 ntBASIC3.14□□□□□ -1.91
ZC3H4Q9UPT8 IGLL4P-201ENST00000614590 133 ntBASIC3.14□□□□□ -1.91
ZC3H4Q9UPT8 AC245884.12-201ENST00000615364 59 ntBASIC3.14□□□□□ -1.91
ZC3H4Q9UPT8 AC091304.10-201ENST00000641554 121 ntBASIC3.14□□□□□ -1.91
ZC3H4Q9UPT8 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.13□□□□□ -1.91
ZC3H4Q9UPT8 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
ZC3H4Q9UPT8 HMGN2P23-201ENST00000456759 269 ntBASIC3.13□□□□□ -1.91
ZC3H4Q9UPT8 RNVU1-2-201ENST00000516326 135 ntBASIC3.13□□□□□ -1.91
ZC3H4Q9UPT8 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.13□□□□□ -1.91
ZC3H4Q9UPT8 AL512310.12-203ENST00000640543 90 ntBASIC3.13□□□□□ -1.91
ZC3H4Q9UPT8 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.13□□□□□ -1.91
ZC3H4Q9UPT8 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
ZC3H4Q9UPT8 Y_RNA.219-201ENST00000364232 113 ntBASIC3.12□□□□□ -1.91
ZC3H4Q9UPT8 Y_RNA.226-201ENST00000364337 114 ntBASIC3.12□□□□□ -1.91
ZC3H4Q9UPT8 RNU6-1152P-201ENST00000384576 107 ntBASIC3.12□□□□□ -1.91
ZC3H4Q9UPT8 SNORD88.1-201ENST00000408684 91 ntBASIC3.12□□□□□ -1.91
ZC3H4Q9UPT8 AL353813.1-201ENST00000440700 253 ntBASIC3.12□□□□□ -1.91
ZC3H4Q9UPT8 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.12□□□□□ -1.91
ZC3H4Q9UPT8 DNAJC19P9-201ENST00000555084 351 ntBASIC3.12□□□□□ -1.91
ZC3H4Q9UPT8 MIR4529-201ENST00000578110 78 ntBASIC3.12□□□□□ -1.91
ZC3H4Q9UPT8 MIR3605-201ENST00000583214 100 ntBASIC3.12□□□□□ -1.91
ZC3H4Q9UPT8 RNU6-60P-201ENST00000364792 103 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms