Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC008133.2-201ENST00000624540 351 ntBASIC1.93□□□□□ -2.1
TRIM39Q9HCM9 AL596211.1-201ENST00000569873 2277 ntBASIC1.93□□□□□ -2.1
TRIM39Q9HCM9 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.92□□□□□ -2.1
TRIM39Q9HCM9 MIR302D-201ENST00000362275 68 ntBASIC1.92□□□□□ -2.1
TRIM39Q9HCM9 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.92□□□□□ -2.1
TRIM39Q9HCM9 RNA5SP182-201ENST00000516064 82 ntBASIC1.92□□□□□ -2.1
TRIM39Q9HCM9 RNU6-250P-201ENST00000516958 103 ntBASIC1.92□□□□□ -2.1
TRIM39Q9HCM9 MIR3124-201ENST00000582636 67 ntBASIC1.92□□□□□ -2.1
TRIM39Q9HCM9 AC012493.3-201ENST00000604494 112 ntBASIC1.92□□□□□ -2.1
TRIM39Q9HCM9 MIR4791-201ENST00000607666 84 ntBASIC1.92□□□□□ -2.1
TRIM39Q9HCM9 AC091932.4-201ENST00000623386 200 ntBASIC1.92□□□□□ -2.1
TRIM39Q9HCM9 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
TRIM39Q9HCM9 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 RNA5SP48-201ENST00000363969 126 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 RNU6-647P-201ENST00000364243 107 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 SNORA24-201ENST00000384096 131 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 SNORD41-201ENST00000386967 70 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 MIR934-201ENST00000401241 83 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 RNU2-11P-201ENST00000459191 187 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 RNU2-13P-201ENST00000515909 113 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 AC019176.1-201ENST00000518519 225 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 MIR3121-201ENST00000579680 77 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 SNRPGP19-201ENST00000603826 189 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 U2.22-201ENST00000636441 106 ntBASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
TRIM39Q9HCM9 RNU6-309P-201ENST00000364573 106 ntBASIC1.9□□□□□ -2.11
TRIM39Q9HCM9 RNY1P6-201ENST00000384193 109 ntBASIC1.9□□□□□ -2.11
TRIM39Q9HCM9 RNU6-959P-201ENST00000384671 107 ntBASIC1.9□□□□□ -2.11
TRIM39Q9HCM9 RNA5SP261-201ENST00000410536 106 ntBASIC1.9□□□□□ -2.11
TRIM39Q9HCM9 RNU6-971P-201ENST00000516920 106 ntBASIC1.9□□□□□ -2.11
TRIM39Q9HCM9 RNU6-958P-201ENST00000516995 106 ntBASIC1.9□□□□□ -2.11
TRIM39Q9HCM9 Y_RNA.494-201ENST00000384432 111 ntBASIC1.89□□□□□ -2.11
TRIM39Q9HCM9 RNU6-1117P-201ENST00000384525 104 ntBASIC1.89□□□□□ -2.11
TRIM39Q9HCM9 RNU1-78P-201ENST00000391248 165 ntBASIC1.89□□□□□ -2.11
TRIM39Q9HCM9 AC027119.1-201ENST00000440877 241 ntBASIC1.89□□□□□ -2.11
TRIM39Q9HCM9 snoU13.16-201ENST00000459350 104 ntBASIC1.89□□□□□ -2.11
TRIM39Q9HCM9 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.89□□□□□ -2.11
TRIM39Q9HCM9 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 RNU6-690P-201ENST00000365242 106 ntBASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 MIR570-201ENST00000384917 97 ntBASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 MIR504-201ENST00000385065 83 ntBASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 U8.13-201ENST00000390842 128 ntBASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 AL445685.2-201ENST00000422551 342 ntBASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 AC245517.4-201ENST00000448601 281 ntBASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 RNU7-73P-201ENST00000458743 63 ntBASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 RNU6-62P-201ENST00000516526 102 ntBASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.88□□□□□ -2.11
TRIM39Q9HCM9 Y_RNA.114-201ENST00000363265 113 ntBASIC1.87□□□□□ -2.11
TRIM39Q9HCM9 SNORA19-201ENST00000384737 128 ntBASIC1.87□□□□□ -2.11
TRIM39Q9HCM9 SUMO2P12-201ENST00000405924 140 ntBASIC1.87□□□□□ -2.11
TRIM39Q9HCM9 MIR1289-2-201ENST00000408360 111 ntBASIC1.87□□□□□ -2.11
TRIM39Q9HCM9 RNA5SP445-201ENST00000515889 115 ntBASIC1.87□□□□□ -2.11
TRIM39Q9HCM9 DNAJC19P9-201ENST00000555084 351 ntBASIC1.87□□□□□ -2.11
TRIM39Q9HCM9 MIR3152-201ENST00000579801 74 ntBASIC1.87□□□□□ -2.11
TRIM39Q9HCM9 MIR4251-201ENST00000635819 61 ntBASIC1.87□□□□□ -2.11
TRIM39Q9HCM9 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.87□□□□□ -2.11
TRIM39Q9HCM9 SNORD113-1-201ENST00000365321 69 ntBASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 RNU6-80P-201ENST00000384195 107 ntBASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 MIR583-201ENST00000384846 75 ntBASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 AL606753.1-201ENST00000427435 87 ntBASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 AL158147.1-201ENST00000443970 75 ntBASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 RNU6-893P-201ENST00000458841 100 ntBASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 Y_RNA.651-201ENST00000459380 103 ntBASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 RN7SKP179-201ENST00000516126 217 ntBASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 RNU6-947P-201ENST00000516264 106 ntBASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 MIR7843-201ENST00000622274 79 ntBASIC1.86□□□□□ -2.11
TRIM39Q9HCM9 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
TRIM39Q9HCM9 AL157777.2-201ENST00000258070 137 ntBASIC1.85□□□□□ -2.11
TRIM39Q9HCM9 SNORA40.18-201ENST00000391200 128 ntBASIC1.85□□□□□ -2.11
TRIM39Q9HCM9 AC008267.6-201ENST00000441664 139 ntBASIC1.85□□□□□ -2.11
TRIM39Q9HCM9 AC133485.4-201ENST00000561835 220 ntBASIC1.85□□□□□ -2.11
TRIM39Q9HCM9 AC138907.4-201ENST00000570107 226 ntBASIC1.85□□□□□ -2.11
TRIM39Q9HCM9 MIR3122-201ENST00000577243 73 ntBASIC1.85□□□□□ -2.11
TRIM39Q9HCM9 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
TRIM39Q9HCM9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.84□□□□□ -2.11
TRIM39Q9HCM9 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.84□□□□□ -2.11
TRIM39Q9HCM9 RNU7-41P-201ENST00000515917 61 ntBASIC1.84□□□□□ -2.11
TRIM39Q9HCM9 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.84□□□□□ -2.11
TRIM39Q9HCM9 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
TRIM39Q9HCM9 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
TRIM39Q9HCM9 Y_RNA.294-201ENST00000364916 102 ntBASIC1.83□□□□□ -2.12
TRIM39Q9HCM9 RNU6-295P-201ENST00000516901 104 ntBASIC1.83□□□□□ -2.12
TRIM39Q9HCM9 MIR3664-201ENST00000579074 99 ntBASIC1.83□□□□□ -2.12
TRIM39Q9HCM9 AL121890.5-201ENST00000620848 304 ntBASIC1.83□□□□□ -2.12
TRIM39Q9HCM9 RNU6-349P-201ENST00000362402 107 ntBASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 Y_RNA.71-201ENST00000362892 104 ntBASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 SNORD116-14-201ENST00000383894 92 ntBASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 SNORD116-17-201ENST00000383929 92 ntBASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 SNORD116-15-201ENST00000384445 92 ntBASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 SNORD116-19-201ENST00000384729 92 ntBASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 SNORA26.9-201ENST00000391322 122 ntBASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 RNU6-240P-201ENST00000516098 97 ntBASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 AL512310.8-201ENST00000550183 120 ntBASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 AL137067.1-201ENST00000615933 120 ntBASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
TRIM39Q9HCM9 AC021613.1-201ENST00000623880 111 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 212 ms