Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 Y_RNA.525-201ENST00000384570 113 ntBASIC1.95□□□□□ -2.1
PCIF1Q9H4Z3 SNX2P2-201ENST00000424553 323 ntBASIC1.95□□□□□ -2.1
PCIF1Q9H4Z3 HMGN2P19-201ENST00000425149 265 ntBASIC1.95□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-1333P-201ENST00000516162 93 ntBASIC1.95□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-479P-201ENST00000516348 105 ntBASIC1.95□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-295P-201ENST00000516901 104 ntBASIC1.95□□□□□ -2.1
PCIF1Q9H4Z3 AC015712.3-201ENST00000559380 164 ntBASIC1.95□□□□□ -2.1
PCIF1Q9H4Z3 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 MIR342-201ENST00000362212 99 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 MIR570-201ENST00000384917 97 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 SNORD41-201ENST00000386967 70 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-482P-201ENST00000391068 107 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 RNU2-51P-201ENST00000410708 197 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 AC008267.6-201ENST00000441664 139 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 AL158147.1-201ENST00000443970 75 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 RNU7-96P-201ENST00000459535 64 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 RN7SL274P-201ENST00000492268 272 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-998P-201ENST00000515894 101 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 RNU2-13P-201ENST00000515909 113 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-62P-201ENST00000516526 102 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 RNU7-70P-201ENST00000516941 66 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 MIR4769-201ENST00000584126 77 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 AC084768.2-201ENST00000622736 221 ntBASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
PCIF1Q9H4Z3 RNU1-133P-201ENST00000364867 167 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 Y_RNA.291-201ENST00000364886 113 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 MIR676-201ENST00000390702 67 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-1168P-201ENST00000390831 104 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 AL591806.2-201ENST00000433122 173 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 RNU7-80P-201ENST00000459562 61 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 AC108210.2-201ENST00000503681 201 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 SNORA31.4-201ENST00000516049 129 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-922P-201ENST00000516753 99 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 uc_338.20-201ENST00000621563 178 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 MIR8063-201ENST00000621930 81 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 AL596211.1-201ENST00000569873 2277 ntBASIC1.93□□□□□ -2.1
PCIF1Q9H4Z3 MIR302D-201ENST00000362275 68 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 SNORA22C-201ENST00000384614 134 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 MIR30A-201ENST00000385092 71 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-1154P-201ENST00000391001 104 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 AL451046.2-201ENST00000403074 277 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-322P-201ENST00000516010 103 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-772P-201ENST00000516042 105 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-659P-201ENST00000516454 104 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 IGKV1-22-201ENST00000524313 326 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 MIR4764-201ENST00000580680 88 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 AL096840.1-201ENST00000603287 93 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.92□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-349P-201ENST00000362402 107 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-647P-201ENST00000364243 107 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 SNORA24-201ENST00000384096 131 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 Y_RNA.454-201ENST00000384224 113 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 snoU13.9-201ENST00000458927 103 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 RNU2-11P-201ENST00000459191 187 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 AC107297.1-201ENST00000459991 176 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-240P-201ENST00000516098 97 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-313P-201ENST00000516317 112 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 RNU7-43P-201ENST00000516554 64 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 RNU6-113P-201ENST00000516653 101 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 MIR514B-201ENST00000516774 80 ntBASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
PCIF1Q9H4Z3 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 Y_RNA.366-201ENST00000365540 102 ntBASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 RNY1P6-201ENST00000384193 109 ntBASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 RNU6-1081P-201ENST00000384537 107 ntBASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 Y_RNA.617-201ENST00000410920 90 ntBASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 AL035398.1-201ENST00000430869 322 ntBASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 RPS29P29-201ENST00000456396 171 ntBASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 SNORD111.1-201ENST00000516421 86 ntBASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 RNU6-250P-201ENST00000516958 103 ntBASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 MIR4791-201ENST00000607666 84 ntBASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
PCIF1Q9H4Z3 RNU6-690P-201ENST00000365242 106 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 SNORA70.7-201ENST00000384159 133 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 SNORA26.9-201ENST00000391322 122 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 RNU2-40P-201ENST00000410833 196 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 HSPE1P24-201ENST00000450782 238 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 RNU6-781P-201ENST00000516377 101 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 HSPE1P19-201ENST00000603327 295 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 AC243994.1-201ENST00000618627 109 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 AC008133.2-201ENST00000624540 351 ntBASIC1.89□□□□□ -2.11
PCIF1Q9H4Z3 RNU4-16P-201ENST00000364737 141 ntBASIC1.88□□□□□ -2.11
PCIF1Q9H4Z3 SNORD48-201ENST00000364953 64 ntBASIC1.88□□□□□ -2.11
PCIF1Q9H4Z3 Y_RNA.537-201ENST00000384626 109 ntBASIC1.88□□□□□ -2.11
PCIF1Q9H4Z3 MIR520C-201ENST00000385005 87 ntBASIC1.88□□□□□ -2.11
PCIF1Q9H4Z3 RNU7-67P-201ENST00000459003 62 ntBASIC1.88□□□□□ -2.11
PCIF1Q9H4Z3 RNU6-1061P-201ENST00000516530 99 ntBASIC1.88□□□□□ -2.11
PCIF1Q9H4Z3 RNU6-958P-201ENST00000516995 106 ntBASIC1.88□□□□□ -2.11
PCIF1Q9H4Z3 SNORA44.1-201ENST00000517031 108 ntBASIC1.88□□□□□ -2.11
PCIF1Q9H4Z3 AL513534.2-201ENST00000603836 250 ntBASIC1.88□□□□□ -2.11
PCIF1Q9H4Z3 RNA5SP205-201ENST00000364653 136 ntBASIC1.87□□□□□ -2.11
PCIF1Q9H4Z3 SNORD58C-201ENST00000365223 64 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms