Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 SNORD28B-201ENST00000390993 75 ntBASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 AC015818.7-201ENST00000428754 109 ntBASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 AC092628.1-201ENST00000436250 252 ntBASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 AC067747.1-201ENST00000608026 250 ntBASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 AC007318.2-201ENST00000620999 243 ntBASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
NPAS3Q8IXF0 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-330P-201ENST00000363015 107 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 MIR515-2-201ENST00000384883 83 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 MIR515-1-201ENST00000384884 83 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-447P-201ENST00000410293 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-1118P-201ENST00000410382 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-1076P-201ENST00000410397 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-355P-201ENST00000410427 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-791P-201ENST00000410467 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-705P-201ENST00000410601 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-1100P-201ENST00000410691 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-860P-201ENST00000410860 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-1217P-201ENST00000411276 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RNU6-785P-201ENST00000411324 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 AC074348.1-201ENST00000426503 132 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 RN7SL20P-201ENST00000488827 297 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 AC107016.2-201ENST00000547968 190 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 U6.90-201ENST00000614007 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 U6.70-201ENST00000620287 104 ntBASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC3.06□□□□□ -1.92
NPAS3Q8IXF0 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 MIR337-201ENST00000362281 93 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 Y_RNA.12-201ENST00000362393 112 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 RNA5SP295-201ENST00000362655 121 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 MIR520H-201ENST00000385126 88 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 FO393413.1-201ENST00000402892 195 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 AC087499.2-201ENST00000432861 149 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 RNU7-73P-201ENST00000458743 63 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 AC245166.1-201ENST00000521012 253 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 MIR4536-1-201ENST00000583537 88 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 AC027279.3-201ENST00000625055 122 ntBASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
NPAS3Q8IXF0 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 RNU1-105P-201ENST00000363470 161 ntBASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 Y_RNA.264-201ENST00000364665 102 ntBASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 SNORA9.2-201ENST00000365361 133 ntBASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 RNU2-48P-201ENST00000410694 191 ntBASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 AC244636.1-201ENST00000421152 228 ntBASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 CST2P1-201ENST00000425770 87 ntBASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 AC093850.1-201ENST00000454121 251 ntBASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 AC079600.2-201ENST00000550076 130 ntBASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 MIR3199-1-201ENST00000582434 88 ntBASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 MIR8054-201ENST00000620877 86 ntBASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
NPAS3Q8IXF0 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
NPAS3Q8IXF0 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
NPAS3Q8IXF0 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
NPAS3Q8IXF0 MIR148B-201ENST00000362252 99 ntBASIC3.03□□□□□ -1.92
NPAS3Q8IXF0 RNU6-132P-201ENST00000383863 107 ntBASIC3.03□□□□□ -1.92
NPAS3Q8IXF0 SNORA24-201ENST00000384096 131 ntBASIC3.03□□□□□ -1.92
NPAS3Q8IXF0 U8.16-201ENST00000391279 133 ntBASIC3.03□□□□□ -1.92
NPAS3Q8IXF0 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.03□□□□□ -1.92
NPAS3Q8IXF0 MIR548AR-201ENST00000582191 57 ntBASIC3.03□□□□□ -1.92
NPAS3Q8IXF0 MIR5739-201ENST00000619803 80 ntBASIC3.03□□□□□ -1.92
NPAS3Q8IXF0 CD24P4-201ENST00000382840 243 ntBASIC3.02□□□□□ -1.93
NPAS3Q8IXF0 SNORD90-201ENST00000391145 111 ntBASIC3.02□□□□□ -1.93
NPAS3Q8IXF0 RNU2-7P-201ENST00000410794 178 ntBASIC3.02□□□□□ -1.93
NPAS3Q8IXF0 Y_RNA.648-201ENST00000459455 110 ntBASIC3.02□□□□□ -1.93
NPAS3Q8IXF0 AC005908.1-201ENST00000468701 347 ntBASIC3.02□□□□□ -1.93
NPAS3Q8IXF0 RPS29P11-201ENST00000496507 171 ntBASIC3.02□□□□□ -1.93
NPAS3Q8IXF0 AC090897.1-201ENST00000580909 226 ntBASIC3.02□□□□□ -1.93
NPAS3Q8IXF0 MIR8065-201ENST00000620577 100 ntBASIC3.02□□□□□ -1.93
NPAS3Q8IXF0 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
NPAS3Q8IXF0 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
NPAS3Q8IXF0 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 HSBP1P2-201ENST00000299671 229 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 RNU6-895P-201ENST00000384125 103 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 SNORA72.6-201ENST00000384520 129 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 RNU6-160P-201ENST00000384591 107 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 RNU6-1328P-201ENST00000410938 106 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 AC079150.2-201ENST00000443733 78 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 HSPE1P24-201ENST00000450782 238 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 RN7SL636P-201ENST00000497504 294 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 RNU7-12P-201ENST00000516030 62 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 RNA5SP380-201ENST00000517190 98 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms