Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 MIR4769-201ENST00000584126 77 ntBASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 AL442644.1-201ENST00000454390 3105 ntBASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SH3RF1Q7Z6J0 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SH3RF1Q7Z6J0 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SH3RF1Q7Z6J0 Y_RNA.247-201ENST00000364500 92 ntBASIC3.2□□□□□ -1.9
SH3RF1Q7Z6J0 RNU6-1163P-201ENST00000364516 107 ntBASIC3.2□□□□□ -1.9
SH3RF1Q7Z6J0 MIR516B2-201ENST00000385190 85 ntBASIC3.2□□□□□ -1.9
SH3RF1Q7Z6J0 AL513328.1-201ENST00000446460 224 ntBASIC3.2□□□□□ -1.9
SH3RF1Q7Z6J0 RNU6-86P-201ENST00000606534 107 ntBASIC3.2□□□□□ -1.9
SH3RF1Q7Z6J0 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
SH3RF1Q7Z6J0 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SH3RF1Q7Z6J0 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 RNU1-58P-201ENST00000362413 163 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 Y_RNA.140-201ENST00000363474 103 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 RNU6-457P-201ENST00000363999 107 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 RNU1-112P-201ENST00000364401 164 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 MIR136-201ENST00000385207 82 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 AL161932.1-201ENST00000437408 146 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 RPS29P29-201ENST00000456396 171 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 RNU7-34P-201ENST00000459394 64 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 AC004223.1-201ENST00000479840 271 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 AC093729.1-201ENST00000513074 128 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 RNA5SP168-201ENST00000516642 112 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 AC103810.6-201ENST00000606708 136 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 U7.4-201ENST00000614961 63 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 FAS-AS1.1-201ENST00000615327 126 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 MIR6841-201ENST00000637129 72 ntBASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
SH3RF1Q7Z6J0 RPS12P2-201ENST00000439728 269 ntBASIC3.18□□□□□ -1.9
SH3RF1Q7Z6J0 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.18□□□□□ -1.9
SH3RF1Q7Z6J0 AC003982.1-202ENST00000469928 248 ntBASIC3.18□□□□□ -1.9
SH3RF1Q7Z6J0 AC090255.1-201ENST00000495779 349 ntBASIC3.18□□□□□ -1.9
SH3RF1Q7Z6J0 UBL5P1-201ENST00000507979 193 ntBASIC3.18□□□□□ -1.9
SH3RF1Q7Z6J0 RNU6-523P-201ENST00000516304 54 ntBASIC3.18□□□□□ -1.9
SH3RF1Q7Z6J0 MIR5094-201ENST00000578766 85 ntBASIC3.18□□□□□ -1.9
SH3RF1Q7Z6J0 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.18□□□□□ -1.9
SH3RF1Q7Z6J0 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SH3RF1Q7Z6J0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 RNU6-315P-201ENST00000362666 107 ntBASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 RN7SKP123-201ENST00000410732 291 ntBASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 AC140658.3-201ENST00000567603 271 ntBASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 MIR4524B-201ENST00000581569 115 ntBASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 MIR4791-201ENST00000607666 84 ntBASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 AC022513.1-201ENST00000624512 117 ntBASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 SNORD3E-202ENST00000627253 216 ntBASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 PLD1-217ENST00000627725 174 ntTSL 5 BASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SH3RF1Q7Z6J0 AC007336.1-201ENST00000576365 3828 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 SNORA32-201ENST00000384072 121 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 SNORA67.4-201ENST00000384688 142 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 RNU6-1067P-201ENST00000384752 107 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 MIR519C-201ENST00000385053 87 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 SNORD88.1-201ENST00000408684 91 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 AL445685.2-201ENST00000422551 342 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 HSPE1P9-201ENST00000440046 311 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 snoU13.26-201ENST00000459452 105 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 AC107016.2-201ENST00000547968 190 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 SEPT14P17-201ENST00000617978 177 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 MIR6717-201ENST00000622747 73 ntBASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SH3RF1Q7Z6J0 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.15□□□□□ -1.9
SH3RF1Q7Z6J0 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
SH3RF1Q7Z6J0 RNA5SP68-201ENST00000363885 119 ntBASIC3.15□□□□□ -1.91
SH3RF1Q7Z6J0 SNORD53-201ENST00000579969 78 ntBASIC3.15□□□□□ -1.91
SH3RF1Q7Z6J0 MIR4506-201ENST00000584693 77 ntBASIC3.15□□□□□ -1.91
SH3RF1Q7Z6J0 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SH3RF1Q7Z6J0 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 RNU6-1244P-201ENST00000363614 108 ntBASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 SNORD38.1-201ENST00000363863 68 ntBASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 MIR504-201ENST00000385065 83 ntBASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 SNORA26.6-201ENST00000391256 115 ntBASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 RNA5SP344-201ENST00000411081 104 ntBASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 AC092427.1-202ENST00000430569 476 ntBASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 MIR3126-201ENST00000577443 74 ntBASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 MIR3605-201ENST00000583214 100 ntBASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 MIR6817-201ENST00000615588 66 ntBASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 MIR6733-201ENST00000635723 61 ntBASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
SH3RF1Q7Z6J0 RNU6-859P-201ENST00000362728 107 ntBASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 RNU1-91P-201ENST00000364746 163 ntBASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 RNU6-613P-201ENST00000410412 108 ntBASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 RNA5SP385-201ENST00000515947 110 ntBASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 RNA5SP24-201ENST00000516478 95 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms