Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNORA48.3-201ENST00000391081 134 ntBASIC2.15□□□□□ -2.07
USP39Q53GS9 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.15□□□□□ -2.07
USP39Q53GS9 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.15□□□□□ -2.07
USP39Q53GS9 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.15□□□□□ -2.07
USP39Q53GS9 RNU7-80P-201ENST00000459562 61 ntBASIC2.15□□□□□ -2.07
USP39Q53GS9 RNU7-28P-201ENST00000516759 62 ntBASIC2.15□□□□□ -2.07
USP39Q53GS9 AC141557.1-201ENST00000540982 400 ntBASIC2.15□□□□□ -2.07
USP39Q53GS9 MIR3163-201ENST00000581592 73 ntBASIC2.15□□□□□ -2.07
USP39Q53GS9 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
USP39Q53GS9 Y_RNA.265-201ENST00000364677 108 ntBASIC2.14□□□□□ -2.07
USP39Q53GS9 RNU4-16P-201ENST00000364737 141 ntBASIC2.14□□□□□ -2.07
USP39Q53GS9 AL627390.1-201ENST00000396055 340 ntBASIC2.14□□□□□ -2.07
USP39Q53GS9 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.14□□□□□ -2.07
USP39Q53GS9 SNORA31.10-201ENST00000516482 106 ntBASIC2.14□□□□□ -2.07
USP39Q53GS9 MIR4287-201ENST00000579398 78 ntBASIC2.14□□□□□ -2.07
USP39Q53GS9 MALAT1.1-201ENST00000618249 95 ntBASIC2.14□□□□□ -2.07
USP39Q53GS9 AC087741.2-201ENST00000619415 172 ntBASIC2.14□□□□□ -2.07
USP39Q53GS9 MIR8054-201ENST00000620877 86 ntBASIC2.14□□□□□ -2.07
USP39Q53GS9 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
USP39Q53GS9 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
USP39Q53GS9 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
USP39Q53GS9 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.13□□□□□ -2.07
USP39Q53GS9 MIR302B-201ENST00000362188 73 ntBASIC2.13□□□□□ -2.07
USP39Q53GS9 Y_RNA.140-201ENST00000363474 103 ntBASIC2.13□□□□□ -2.07
USP39Q53GS9 Y_RNA.338-201ENST00000365320 114 ntBASIC2.13□□□□□ -2.07
USP39Q53GS9 Y_RNA.342-201ENST00000365352 113 ntBASIC2.13□□□□□ -2.07
USP39Q53GS9 Y_RNA.466-201ENST00000384294 113 ntBASIC2.13□□□□□ -2.07
USP39Q53GS9 MIR583-201ENST00000384846 75 ntBASIC2.13□□□□□ -2.07
USP39Q53GS9 HMGN2P39-201ENST00000398005 273 ntBASIC2.13□□□□□ -2.07
USP39Q53GS9 RNA5SP57-201ENST00000459463 123 ntBASIC2.13□□□□□ -2.07
USP39Q53GS9 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
USP39Q53GS9 AL359851.1-201ENST00000569460 4997 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 RNU6-23P-201ENST00000363283 107 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 Y_RNA.454-201ENST00000384224 113 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 RNU6-816P-201ENST00000390914 107 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 RNU6-1268P-201ENST00000391214 107 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 RNU6-1239P-201ENST00000391310 107 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 RNA5SP144-201ENST00000410846 116 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 STAG3L5P-204ENST00000443759 179 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 RNU6-998P-201ENST00000515894 101 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 RNU7-6P-201ENST00000516845 62 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 SNORD115-40-201ENST00000606510 82 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 AL627230.6-201ENST00000611129 280 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 AC022202.1-201ENST00000613515 211 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 AC095038.3-201ENST00000634439 195 ntBASIC2.12□□□□□ -2.07
USP39Q53GS9 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.12□□□□□ -2.07
USP39Q53GS9 Y_RNA.93-201ENST00000363066 109 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 Y_RNA.220-201ENST00000364244 109 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 SNORA27-201ENST00000384323 126 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 RN7SKP200-201ENST00000410564 320 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 RPS3AP1-201ENST00000413190 320 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 SNX2P2-201ENST00000424553 323 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 AL512326.2-201ENST00000426359 151 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 RPL39P25-201ENST00000449384 154 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.11□□□□□ -2.07
USP39Q53GS9 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 MIR4778-201ENST00000577635 80 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 MIR3618-201ENST00000580330 88 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 MIR5002-201ENST00000584713 97 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 AL096840.1-201ENST00000603287 93 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 Y_RNA.773-201ENST00000607168 90 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 AC027279.3-201ENST00000625055 122 ntBASIC2.11□□□□□ -2.07
USP39Q53GS9 ICE2P2-201ENST00000483823 2787 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 ZNF355P-201ENST00000427301 3216 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 MIR342-201ENST00000362212 99 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 RNU6-1099P-201ENST00000363533 107 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 RNA5SP173-201ENST00000364857 136 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 RNU6-163P-201ENST00000384396 106 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 MIR1912-201ENST00000410389 80 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 AC107297.1-201ENST00000459991 176 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 RPS23P4-201ENST00000487908 423 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 AC113410.1-201ENST00000505029 247 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 RNA5SP182-201ENST00000516064 82 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 RNU6ATAC17P-201ENST00000516074 71 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 AC004812.1-201ENST00000540773 146 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 AC026271.5-201ENST00000577873 130 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 AP000942.3-201ENST00000603702 160 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 MIR2052-201ENST00000636055 55 ntBASIC2.1□□□□□ -2.07
USP39Q53GS9 SNORD115-19-201ENST00000363098 82 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 Y_RNA.107-201ENST00000363190 121 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 SNORD115-18-201ENST00000363293 82 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 SNORA63D-201ENST00000364359 132 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 Y_RNA.241-201ENST00000364470 117 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 SNORD115-17-201ENST00000364612 82 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 SNORD38C-201ENST00000384381 69 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 RNU6-592P-201ENST00000411333 103 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 POLR2J4-204ENST00000418424 324 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 AC015922.2-201ENST00000435593 184 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 HSPE1P9-201ENST00000440046 311 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 RN7SKP12-201ENST00000516275 143 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 AC005786.1-201ENST00000588553 154 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 AC021613.1-201ENST00000623880 111 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 MIR1255B1-201ENST00000636325 63 ntBASIC2.09□□□□□ -2.07
USP39Q53GS9 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
USP39Q53GS9 RNU1-58P-201ENST00000362413 163 ntBASIC2.08□□□□□ -2.08
USP39Q53GS9 SNORD115-34-201ENST00000362441 82 ntBASIC2.08□□□□□ -2.08
USP39Q53GS9 SNORD115-12-201ENST00000362583 82 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 202.4 ms