Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NCBP3Q53F19 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NCBP3Q53F19 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NCBP3Q53F19 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.85□□□□□ -1.63
NCBP3Q53F19 PRELID3BP2-201ENST00000605362 201 ntBASIC4.85□□□□□ -1.63
NCBP3Q53F19 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NCBP3Q53F19 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
NCBP3Q53F19 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
NCBP3Q53F19 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
NCBP3Q53F19 RNU1-148P-201ENST00000384472 162 ntBASIC4.84□□□□□ -1.63
NCBP3Q53F19 RNA5SP465-201ENST00000391195 109 ntBASIC4.84□□□□□ -1.63
NCBP3Q53F19 UBL5P2-201ENST00000583788 219 ntBASIC4.84□□□□□ -1.63
NCBP3Q53F19 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.84□□□□□ -1.63
NCBP3Q53F19 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
NCBP3Q53F19 RNA5SP42-201ENST00000364278 115 ntBASIC4.83□□□□□ -1.64
NCBP3Q53F19 SNORA57.3-201ENST00000411095 141 ntBASIC4.83□□□□□ -1.64
NCBP3Q53F19 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC4.83□□□□□ -1.64
NCBP3Q53F19 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC4.83□□□□□ -1.64
NCBP3Q53F19 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
NCBP3Q53F19 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
NCBP3Q53F19 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.82□□□□□ -1.64
NCBP3Q53F19 RNU6-895P-201ENST00000384125 103 ntBASIC4.82□□□□□ -1.64
NCBP3Q53F19 AC006989.1-201ENST00000427212 131 ntBASIC4.82□□□□□ -1.64
NCBP3Q53F19 RN7SKP83-201ENST00000516512 178 ntBASIC4.82□□□□□ -1.64
NCBP3Q53F19 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NCBP3Q53F19 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
NCBP3Q53F19 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
NCBP3Q53F19 RNU1-138P-201ENST00000384093 164 ntBASIC4.81□□□□□ -1.64
NCBP3Q53F19 MIR200C-201ENST00000384980 68 ntBASIC4.81□□□□□ -1.64
NCBP3Q53F19 RNA5SP501-201ENST00000410990 112 ntBASIC4.81□□□□□ -1.64
NCBP3Q53F19 AC244636.1-201ENST00000421152 228 ntBASIC4.81□□□□□ -1.64
NCBP3Q53F19 CYCSP4-201ENST00000429682 331 ntBASIC4.81□□□□□ -1.64
NCBP3Q53F19 RNA5SP137-201ENST00000516833 135 ntBASIC4.81□□□□□ -1.64
NCBP3Q53F19 U4.3-201ENST00000621047 82 ntBASIC4.81□□□□□ -1.64
NCBP3Q53F19 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.81□□□□□ -1.64
NCBP3Q53F19 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NCBP3Q53F19 RNU6-1051P-201ENST00000365471 102 ntBASIC4.8□□□□□ -1.64
NCBP3Q53F19 RNU6-291P-201ENST00000384720 107 ntBASIC4.8□□□□□ -1.64
NCBP3Q53F19 MIR563-201ENST00000385080 79 ntBASIC4.8□□□□□ -1.64
NCBP3Q53F19 SNORD105B-201ENST00000458770 79 ntBASIC4.8□□□□□ -1.64
NCBP3Q53F19 MIR6740-201ENST00000618268 113 ntBASIC4.8□□□□□ -1.64
NCBP3Q53F19 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.8□□□□□ -1.64
NCBP3Q53F19 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.8□□□□□ -1.64
NCBP3Q53F19 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NCBP3Q53F19 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NCBP3Q53F19 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
NCBP3Q53F19 ZNF209P-201ENST00000593450 2304 ntBASIC4.79□□□□□ -1.64
NCBP3Q53F19 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NCBP3Q53F19 Y_RNA.207-201ENST00000364142 106 ntBASIC4.79□□□□□ -1.64
NCBP3Q53F19 MIR518A2-201ENST00000384966 87 ntBASIC4.79□□□□□ -1.64
NCBP3Q53F19 SNORD63B-201ENST00000411005 70 ntBASIC4.79□□□□□ -1.64
NCBP3Q53F19 RPS27P29-201ENST00000463110 252 ntBASIC4.79□□□□□ -1.64
NCBP3Q53F19 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
NCBP3Q53F19 Y_RNA.42-201ENST00000362660 108 ntBASIC4.78□□□□□ -1.64
NCBP3Q53F19 RNU6-340P-201ENST00000364005 107 ntBASIC4.78□□□□□ -1.64
NCBP3Q53F19 RNU6-141P-201ENST00000410499 105 ntBASIC4.78□□□□□ -1.64
NCBP3Q53F19 RNU6-322P-201ENST00000516010 103 ntBASIC4.78□□□□□ -1.64
NCBP3Q53F19 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
NCBP3Q53F19 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC4.77□□□□□ -1.65
NCBP3Q53F19 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NCBP3Q53F19 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.77□□□□□ -1.65
NCBP3Q53F19 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NCBP3Q53F19 MIR30D-201ENST00000362283 70 ntBASIC4.77□□□□□ -1.65
NCBP3Q53F19 RNU4-82P-201ENST00000362443 140 ntBASIC4.77□□□□□ -1.65
NCBP3Q53F19 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
NCBP3Q53F19 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC4.77□□□□□ -1.65
NCBP3Q53F19 NDUFB9P3-201ENST00000521269 501 ntBASIC4.77□□□□□ -1.65
NCBP3Q53F19 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.77□□□□□ -1.65
NCBP3Q53F19 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
NCBP3Q53F19 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NCBP3Q53F19 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NCBP3Q53F19 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
NCBP3Q53F19 RNU4ATAC16P-201ENST00000408512 126 ntBASIC4.76□□□□□ -1.65
NCBP3Q53F19 AC092628.1-201ENST00000436250 252 ntBASIC4.76□□□□□ -1.65
NCBP3Q53F19 RNU6-531P-201ENST00000516694 104 ntBASIC4.76□□□□□ -1.65
NCBP3Q53F19 AC008011.1-201ENST00000545989 227 ntBASIC4.76□□□□□ -1.65
NCBP3Q53F19 DEFB122-202ENST00000569013 197 ntBASIC4.76□□□□□ -1.65
NCBP3Q53F19 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
NCBP3Q53F19 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.75□□□□□ -1.65
NCBP3Q53F19 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NCBP3Q53F19 MIR337-201ENST00000362281 93 ntBASIC4.75□□□□□ -1.65
NCBP3Q53F19 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC4.75□□□□□ -1.65
NCBP3Q53F19 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NCBP3Q53F19 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC4.75□□□□□ -1.65
NCBP3Q53F19 SNORA25.4-201ENST00000363666 124 ntBASIC4.74□□□□□ -1.65
NCBP3Q53F19 RNA5SP48-201ENST00000363969 126 ntBASIC4.74□□□□□ -1.65
NCBP3Q53F19 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.74□□□□□ -1.65
NCBP3Q53F19 SNORA70.4-201ENST00000365509 134 ntBASIC4.74□□□□□ -1.65
NCBP3Q53F19 SNORA11.1-201ENST00000408133 129 ntBASIC4.74□□□□□ -1.65
NCBP3Q53F19 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
NCBP3Q53F19 SNORA31.15-201ENST00000516771 132 ntBASIC4.74□□□□□ -1.65
NCBP3Q53F19 MIR3675-201ENST00000583661 73 ntBASIC4.74□□□□□ -1.65
NCBP3Q53F19 AL121772.2-201ENST00000614331 297 ntBASIC4.74□□□□□ -1.65
NCBP3Q53F19 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
NCBP3Q53F19 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NCBP3Q53F19 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
NCBP3Q53F19 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
NCBP3Q53F19 SNORA71.3-201ENST00000362582 128 ntBASIC4.73□□□□□ -1.65
NCBP3Q53F19 SNORD46.1-201ENST00000364139 104 ntBASIC4.73□□□□□ -1.65
NCBP3Q53F19 SNORD45A-201ENST00000384512 84 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms