Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 SNORA77B-201ENST00000578179 125 ntBASIC1.66□□□□□ -2.14
HOXA4Q00056 AC091932.4-201ENST00000623386 200 ntBASIC1.66□□□□□ -2.14
HOXA4Q00056 RNU6-834P-201ENST00000362367 110 ntBASIC1.65□□□□□ -2.15
HOXA4Q00056 RNA5SP259-201ENST00000365541 109 ntBASIC1.65□□□□□ -2.15
HOXA4Q00056 SNORA22-201ENST00000383907 134 ntBASIC1.65□□□□□ -2.15
HOXA4Q00056 RNU6-147P-201ENST00000383983 107 ntBASIC1.65□□□□□ -2.15
HOXA4Q00056 MIR1263-201ENST00000408324 86 ntBASIC1.65□□□□□ -2.15
HOXA4Q00056 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.65□□□□□ -2.15
HOXA4Q00056 UBL5P3-201ENST00000475112 231 ntBASIC1.65□□□□□ -2.15
HOXA4Q00056 RNU6-113P-201ENST00000516653 101 ntBASIC1.65□□□□□ -2.15
HOXA4Q00056 SNORA74.3-201ENST00000517108 154 ntBASIC1.65□□□□□ -2.15
HOXA4Q00056 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.65□□□□□ -2.15
HOXA4Q00056 AL596028.1-201ENST00000326971 197 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 RNA5SP138-201ENST00000365098 114 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 SNORA1.2-201ENST00000365189 134 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 Y_RNA.549-201ENST00000384657 102 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 MIR17-201ENST00000385012 84 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
HOXA4Q00056 AC107297.1-201ENST00000459991 176 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 AC025033.1-201ENST00000463883 194 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 RPS29P24-201ENST00000486345 171 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 RPS29P11-201ENST00000496507 171 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 RNU6-998P-201ENST00000515894 101 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 RNU6-958P-201ENST00000516995 106 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.64□□□□□ -2.15
HOXA4Q00056 MIR3613-201ENST00000579844 87 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 MIR4713-201ENST00000582691 75 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 MIR4298-201ENST00000584380 73 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 MIR6840-201ENST00000611937 71 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 AL137067.1-201ENST00000615933 120 ntBASIC1.64□□□□□ -2.15
HOXA4Q00056 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.64□□□□□ -2.15
HOXA4Q00056 MTND5P18-201ENST00000445624 1801 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.63□□□□□ -2.15
HOXA4Q00056 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.63□□□□□ -2.15
HOXA4Q00056 RNU6-661P-201ENST00000362409 107 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 SNORD114-1-201ENST00000362705 72 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 RNU6-755P-201ENST00000364400 103 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 RNU6-690P-201ENST00000365242 106 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 RNU4-52P-201ENST00000384209 138 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 MIR513A1-201ENST00000385138 129 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.63□□□□□ -2.15
HOXA4Q00056 RNU7-67P-201ENST00000459003 62 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 RNU2-11P-201ENST00000459191 187 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 RNU7-96P-201ENST00000459535 64 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 RNU2-13P-201ENST00000515909 113 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 AC103810.8-201ENST00000607347 118 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 AL035470.1-201ENST00000622571 220 ntBASIC1.63□□□□□ -2.15
HOXA4Q00056 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.63□□□□□ -2.15
HOXA4Q00056 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
HOXA4Q00056 RNY1P6-201ENST00000384193 109 ntBASIC1.62□□□□□ -2.15
HOXA4Q00056 Y_RNA.454-201ENST00000384224 113 ntBASIC1.62□□□□□ -2.15
HOXA4Q00056 MIR653-201ENST00000385279 96 ntBASIC1.62□□□□□ -2.15
HOXA4Q00056 AL035398.1-201ENST00000430869 322 ntBASIC1.62□□□□□ -2.15
HOXA4Q00056 RNU7-45P-201ENST00000459460 63 ntBASIC1.62□□□□□ -2.15
HOXA4Q00056 RNA5SP364-201ENST00000516938 78 ntBASIC1.62□□□□□ -2.15
HOXA4Q00056 AL670379.3-201ENST00000605040 251 ntBASIC1.62□□□□□ -2.15
HOXA4Q00056 uc_338.28-201ENST00000612082 187 ntBASIC1.62□□□□□ -2.15
HOXA4Q00056 AC025166.1-201ENST00000612411 163 ntBASIC1.62□□□□□ -2.15
HOXA4Q00056 MIR8074-201ENST00000615081 81 ntBASIC1.62□□□□□ -2.15
HOXA4Q00056 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.62□□□□□ -2.15
HOXA4Q00056 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
HOXA4Q00056 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
HOXA4Q00056 MIR302B-201ENST00000362188 73 ntBASIC1.61□□□□□ -2.15
HOXA4Q00056 MIR450A1-201ENST00000362262 91 ntBASIC1.61□□□□□ -2.15
HOXA4Q00056 RNU4-16P-201ENST00000364737 141 ntBASIC1.61□□□□□ -2.15
HOXA4Q00056 SNORD116-21-201ENST00000384507 92 ntBASIC1.61□□□□□ -2.15
HOXA4Q00056 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.61□□□□□ -2.15
HOXA4Q00056 RPS29P29-201ENST00000456396 171 ntBASIC1.61□□□□□ -2.15
HOXA4Q00056 MIR5694-201ENST00000581190 76 ntBASIC1.61□□□□□ -2.15
HOXA4Q00056 MIR4791-201ENST00000607666 84 ntBASIC1.61□□□□□ -2.15
HOXA4Q00056 AC243994.1-201ENST00000618627 109 ntBASIC1.61□□□□□ -2.15
HOXA4Q00056 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.61□□□□□ -2.15
HOXA4Q00056 U6.95-201ENST00000636931 70 ntBASIC1.61□□□□□ -2.15
HOXA4Q00056 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
HOXA4Q00056 AC092881.1-201ENST00000638218 2733 ntBASIC1.6□□□□□ -2.15
HOXA4Q00056 Y_RNA.528-201ENST00000384575 108 ntBASIC1.6□□□□□ -2.15
HOXA4Q00056 RNU6-1104P-201ENST00000384723 104 ntBASIC1.6□□□□□ -2.15
HOXA4Q00056 MIR548A3-201ENST00000385297 97 ntBASIC1.6□□□□□ -2.15
HOXA4Q00056 SNORA40.18-201ENST00000391200 128 ntBASIC1.6□□□□□ -2.15
HOXA4Q00056 AL356379.1-201ENST00000414105 126 ntBASIC1.6□□□□□ -2.15
HOXA4Q00056 Y_RNA.649-201ENST00000459077 103 ntBASIC1.6□□□□□ -2.15
HOXA4Q00056 AC022523.2-201ENST00000561045 150 ntBASIC1.6□□□□□ -2.15
HOXA4Q00056 AC015688.6-201ENST00000577737 104 ntBASIC1.6□□□□□ -2.15
HOXA4Q00056 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.6□□□□□ -2.15
HOXA4Q00056 SNORA24-201ENST00000384096 131 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 MIR520C-201ENST00000385005 87 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 RNU6-913P-201ENST00000390913 95 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 RNA5SP89-201ENST00000410300 108 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 AL445685.2-201ENST00000422551 342 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 HMGN2P23-201ENST00000456759 269 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 AC005908.1-201ENST00000468701 347 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 MIR4764-201ENST00000580680 88 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 AC021443.1-201ENST00000604478 211 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 MIR8081-201ENST00000611533 95 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 AL121890.5-201ENST00000620848 304 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.59□□□□□ -2.15
HOXA4Q00056 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.59□□□□□ -2.16
HOXA4Q00056 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.59□□□□□ -2.16
HOXA4Q00056 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms