Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 RNU2-13P-201ENST00000515909 113 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU1-40P-201ENST00000516816 164 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU1-97P-201ENST00000516872 164 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 FAM106DP-201ENST00000586416 501 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC008555.8-201ENST00000623602 2168 ntBASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU6-147P-201ENST00000383983 107 ntBASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU4-52P-201ENST00000384209 138 ntBASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC022523.2-201ENST00000561045 150 ntBASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC021613.1-201ENST00000623880 111 ntBASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC092881.1-201ENST00000638218 2733 ntBASIC2.17□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU6-1123P-201ENST00000362347 106 ntBASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 SNORD12C-201ENST00000386307 89 ntBASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC003989.2-201ENST00000440224 169 ntBASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC011753.1-201ENST00000451001 220 ntBASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU7-45P-201ENST00000459460 63 ntBASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU6-412P-201ENST00000516434 106 ntBASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU6-958P-201ENST00000516995 106 ntBASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AL035470.1-201ENST00000622571 220 ntBASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.85-201ENST00000363014 111 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-414P-201ENST00000363705 104 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 SNORA16B-201ENST00000364674 135 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-1107P-201ENST00000364817 104 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNA5SP37-201ENST00000365420 130 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 SNORA24-201ENST00000384096 131 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 SNORA70.7-201ENST00000384159 133 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR194-1-201ENST00000384892 85 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR759-201ENST00000390224 91 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNA5SP144-201ENST00000410846 116 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RPS29P29-201ENST00000456396 171 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU7-67P-201ENST00000459003 62 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR3613-201ENST00000579844 87 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR6840-201ENST00000611937 71 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 uc_338.28-201ENST00000612082 187 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AC106754.2-201ENST00000623006 233 ntBASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.116-201ENST00000363292 103 ntBASIC2.14□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNY4P6-201ENST00000363667 96 ntBASIC2.14□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-917P-201ENST00000516294 104 ntBASIC2.14□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU7-53P-201ENST00000516705 60 ntBASIC2.14□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR4679-2-201ENST00000578358 77 ntBASIC2.14□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AC243994.1-201ENST00000618627 109 ntBASIC2.14□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AC095038.3-201ENST00000634439 195 ntBASIC2.14□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 SNORD114-1-201ENST00000362705 72 ntBASIC2.13□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNA5SP212-201ENST00000391223 107 ntBASIC2.13□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AC004965.1-201ENST00000413033 213 ntBASIC2.13□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 SNORA74.3-201ENST00000517108 154 ntBASIC2.13□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.13□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR203B-201ENST00000636080 86 ntBASIC2.13□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.12□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 SNORA63.5-201ENST00000363548 123 ntBASIC2.12□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.362-201ENST00000365518 110 ntBASIC2.12□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 SNORA6-201ENST00000384033 151 ntBASIC2.12□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 POLR2J4-204ENST00000418424 324 ntBASIC2.12□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AL512326.2-201ENST00000426359 151 ntBASIC2.12□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RPL23AP6-201ENST00000446637 472 ntBASIC2.12□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR4791-201ENST00000607666 84 ntBASIC2.12□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.12□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.12□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-439P-201ENST00000384188 106 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-106P-201ENST00000384405 107 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-1319P-201ENST00000390855 104 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-913P-201ENST00000390913 95 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-747P-201ENST00000390928 104 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-241P-201ENST00000391148 104 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 SNORA11.2-201ENST00000408318 127 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-177P-201ENST00000411257 104 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AL022718.1-201ENST00000412004 84 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AL161935.2-201ENST00000414627 60 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU7-73P-201ENST00000458743 63 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 DEFB122-202ENST00000569013 197 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR3163-201ENST00000581592 73 ntBASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.11□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AL589743.1-201ENST00000551932 2712 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR450A1-201ENST00000362262 91 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.344-201ENST00000365381 112 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.537-201ENST00000384626 109 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 SNORA26.6-201ENST00000391256 115 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR1261-201ENST00000408659 82 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-554P-201ENST00000410466 106 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNU6-1190P-201ENST00000410811 104 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AL031737.1-201ENST00000450125 223 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AC004812.1-201ENST00000540773 146 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR5694-201ENST00000581190 76 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AL773524.1-201ENST00000614065 229 ntBASIC2.1□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms