Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.87□□□□□ -1.95
USP3Q9Y6I4 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USP3Q9Y6I4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP3Q9Y6I4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USP3Q9Y6I4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USP3Q9Y6I4 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USP3Q9Y6I4 AC062016.1-201ENST00000355719 319 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 Y_RNA.17-201ENST00000362433 111 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 SNORA5B-201ENST00000363786 132 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 RNU6-60P-201ENST00000364792 103 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 RNU6-1201P-201ENST00000384227 107 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 Y_RNA.537-201ENST00000384626 109 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 MIR597-201ENST00000384968 97 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 MIR605-201ENST00000385078 83 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 RNU6-679P-201ENST00000391003 106 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 MIR1283-2-201ENST00000408621 87 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 RN7SKP123-201ENST00000410732 291 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 AC108938.1-201ENST00000451204 136 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 RNU7-26P-201ENST00000458980 63 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 Y_RNA.705-201ENST00000516862 110 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 MIR4709-201ENST00000577272 72 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 AL020996.3-201ENST00000606617 222 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 AC022202.1-201ENST00000613515 211 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 U7.3-201ENST00000616123 62 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 AC012531.4-201ENST00000616509 177 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 MIR6717-201ENST00000622747 73 ntBASIC2.86□□□□□ -1.95
USP3Q9Y6I4 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.86□□□□□ -1.95
USP3Q9Y6I4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
USP3Q9Y6I4 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.85□□□□□ -1.95
USP3Q9Y6I4 MIR660-201ENST00000385235 97 ntBASIC2.85□□□□□ -1.95
USP3Q9Y6I4 RNU6-644P-201ENST00000391155 98 ntBASIC2.85□□□□□ -1.95
USP3Q9Y6I4 Y_RNA.593-201ENST00000410292 98 ntBASIC2.85□□□□□ -1.95
USP3Q9Y6I4 SNORA7.5-201ENST00000410672 110 ntBASIC2.85□□□□□ -1.95
USP3Q9Y6I4 RNU7-45P-201ENST00000459460 63 ntBASIC2.85□□□□□ -1.95
USP3Q9Y6I4 SNORA9.3-201ENST00000516383 129 ntBASIC2.85□□□□□ -1.95
USP3Q9Y6I4 RNU6-1258P-201ENST00000516911 111 ntBASIC2.85□□□□□ -1.95
USP3Q9Y6I4 MIR4319-201ENST00000577285 85 ntBASIC2.85□□□□□ -1.95
USP3Q9Y6I4 AC243994.1-201ENST00000618627 109 ntBASIC2.85□□□□□ -1.95
USP3Q9Y6I4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
USP3Q9Y6I4 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
USP3Q9Y6I4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.84□□□□□ -1.95
USP3Q9Y6I4 RNU6-1313P-201ENST00000362622 102 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 Y_RNA.95-201ENST00000363079 95 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 RNU6-616P-201ENST00000384353 107 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 SNORD78.1-201ENST00000390866 65 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 RNU6-972P-201ENST00000391208 107 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 MIR887-201ENST00000401258 79 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 AL353813.1-201ENST00000440700 253 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 AC109327.2-201ENST00000448339 378 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 SNORD109B-201ENST00000458961 67 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 SNORD109A-201ENST00000459128 67 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 RNU7-34P-201ENST00000459394 64 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 SNORD123-201ENST00000459473 70 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 RNU6-795P-201ENST00000516323 103 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 SUB1P4-201ENST00000566062 339 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 SCARNA15.3-201ENST00000626315 122 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 SCARNA4.1-201ENST00000628597 123 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 MIR3202-2-201ENST00000635980 79 ntBASIC2.84□□□□□ -1.95
USP3Q9Y6I4 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.84□□□□□ -1.96
USP3Q9Y6I4 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.96
USP3Q9Y6I4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
USP3Q9Y6I4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
USP3Q9Y6I4 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
USP3Q9Y6I4 SNORA1.1-201ENST00000364671 133 ntBASIC2.83□□□□□ -1.96
USP3Q9Y6I4 Y_RNA.470-201ENST00000384307 117 ntBASIC2.83□□□□□ -1.96
USP3Q9Y6I4 MIR518A2-201ENST00000384966 87 ntBASIC2.83□□□□□ -1.96
USP3Q9Y6I4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.83□□□□□ -1.96
USP3Q9Y6I4 RNA5SP184-201ENST00000411071 108 ntBASIC2.83□□□□□ -1.96
USP3Q9Y6I4 snoU13.27-201ENST00000459278 104 ntBASIC2.83□□□□□ -1.96
USP3Q9Y6I4 snoU13.16-201ENST00000459350 104 ntBASIC2.83□□□□□ -1.96
USP3Q9Y6I4 AC103810.6-201ENST00000606708 136 ntBASIC2.83□□□□□ -1.96
USP3Q9Y6I4 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.83□□□□□ -1.96
USP3Q9Y6I4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.82□□□□□ -1.96
USP3Q9Y6I4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
USP3Q9Y6I4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.82□□□□□ -1.96
USP3Q9Y6I4 RNY1P1-201ENST00000364372 112 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 RNU1-51P-201ENST00000365345 176 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 Y_RNA.354-201ENST00000365448 111 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 RNU6-573P-201ENST00000383938 106 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 RNU6-887P-201ENST00000410660 100 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 HMGN2P3-201ENST00000433603 273 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 HMGN2P5-201ENST00000436882 273 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 Y_RNA.659-201ENST00000515994 113 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 RNU6-521P-201ENST00000516663 105 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.82□□□□□ -1.96
USP3Q9Y6I4 MIR3162-201ENST00000581818 82 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 MIR4791-201ENST00000607666 84 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 AC021506.2-201ENST00000612354 169 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 IGLL4P-201ENST00000614590 133 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 U1.36-201ENST00000620684 176 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.82□□□□□ -1.96
USP3Q9Y6I4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
USP3Q9Y6I4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
USP3Q9Y6I4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
USP3Q9Y6I4 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.81□□□□□ -1.96
USP3Q9Y6I4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
USP3Q9Y6I4 RNY1P10-201ENST00000363268 113 ntBASIC2.81□□□□□ -1.96
USP3Q9Y6I4 U8.9-201ENST00000365667 134 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms