Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 MIR3670-2-201ENST00000582974 65 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 MIR3670-1-201ENST00000584160 65 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 MIR3670-3-201ENST00000584855 65 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 AC073413.2-201ENST00000604332 360 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 MIR3670-4-201ENST00000612260 65 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 MIR1255B1-201ENST00000636325 63 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 RNU6-633P-201ENST00000362612 103 ntBASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 RNU6-733P-201ENST00000410759 104 ntBASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 CYP2C59P-201ENST00000457790 269 ntBASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 RNU6-693P-201ENST00000516134 107 ntBASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 U7.4-201ENST00000614961 63 ntBASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 FAS-AS1.1-201ENST00000615327 126 ntBASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 MIR5739-201ENST00000619803 80 ntBASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 AL161431.1-201ENST00000618966 4205 ntBASIC3.2□□□□□ -1.9
COL17A1Q9UMD9 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 RNU6-888P-201ENST00000363010 101 ntBASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 RNU6-1235P-201ENST00000384559 107 ntBASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 MICF-203ENST00000432679 129 ntBASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 RNU6-498P-201ENST00000459468 107 ntBASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 AC090255.1-201ENST00000495779 349 ntBASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 SEM1P1-201ENST00000506694 209 ntBASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 RNU6-523P-201ENST00000516304 54 ntBASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 MIR4303-201ENST00000581299 66 ntBASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 Y_RNA.773-201ENST00000607168 90 ntBASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 AC087741.2-201ENST00000619415 172 ntBASIC3.19□□□□□ -1.9
COL17A1Q9UMD9 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 Y_RNA.95-201ENST00000363079 95 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 Y_RNA.96-201ENST00000363092 109 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 MIR548A2-201ENST00000384956 97 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 MRPS17P9-201ENST00000511924 393 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 SCARNA3-201ENST00000517097 143 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 AC004486.1-201ENST00000546846 233 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 MIR3618-201ENST00000580330 88 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 AC008507.4-201ENST00000585464 127 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 AL137847.3-201ENST00000611521 109 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 U6.73-201ENST00000619194 103 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 AC010297.1-201ENST00000623948 149 ntBASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
COL17A1Q9UMD9 RNU6-363P-201ENST00000362895 105 ntBASIC3.17□□□□□ -1.9
COL17A1Q9UMD9 SNORD45B-201ENST00000364617 72 ntBASIC3.17□□□□□ -1.9
COL17A1Q9UMD9 RNU6-117P-201ENST00000365415 107 ntBASIC3.17□□□□□ -1.9
COL17A1Q9UMD9 RPS4XP11-201ENST00000446897 772 ntBASIC3.17□□□□□ -1.9
COL17A1Q9UMD9 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.17□□□□□ -1.9
COL17A1Q9UMD9 RPL23AP63-201ENST00000498752 471 ntBASIC3.17□□□□□ -1.9
COL17A1Q9UMD9 RNA5SP182-201ENST00000516064 82 ntBASIC3.17□□□□□ -1.9
COL17A1Q9UMD9 RNU2-35P-201ENST00000516446 142 ntBASIC3.17□□□□□ -1.9
COL17A1Q9UMD9 MIR5197-201ENST00000583721 112 ntBASIC3.17□□□□□ -1.9
COL17A1Q9UMD9 AL513534.2-201ENST00000603836 250 ntBASIC3.17□□□□□ -1.9
COL17A1Q9UMD9 SNORA2.2-201ENST00000365473 135 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 RNU1-138P-201ENST00000384093 164 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 AC003989.2-201ENST00000440224 169 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 AC093259.1-201ENST00000509755 300 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 JPX_2.1-201ENST00000614161 69 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 SNORD58A-201ENST00000383875 65 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 SNORD24-201ENST00000383884 75 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 RNU6-546P-201ENST00000383991 107 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 MTND4LP19-201ENST00000403051 166 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 AC016717.1-201ENST00000448918 286 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 RPS27P22-201ENST00000478056 241 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 SNORA4.4-201ENST00000515921 135 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 RNU6-826P-201ENST00000516827 104 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 RNU7-172P-201ENST00000517125 64 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 MIR4305-201ENST00000583252 102 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 MIR203B-201ENST00000636080 86 ntBASIC3.16□□□□□ -1.9
COL17A1Q9UMD9 RNA5SP325-201ENST00000363756 130 ntBASIC3.15□□□□□ -1.91
COL17A1Q9UMD9 RNU11-5P-201ENST00000391216 129 ntBASIC3.15□□□□□ -1.91
COL17A1Q9UMD9 MIR1265-201ENST00000408444 86 ntBASIC3.15□□□□□ -1.91
COL17A1Q9UMD9 AL353813.1-201ENST00000440700 253 ntBASIC3.15□□□□□ -1.91
COL17A1Q9UMD9 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.15□□□□□ -1.91
COL17A1Q9UMD9 RNU6-539P-201ENST00000516665 103 ntBASIC3.15□□□□□ -1.91
COL17A1Q9UMD9 AC011604.1-201ENST00000545978 196 ntBASIC3.15□□□□□ -1.91
COL17A1Q9UMD9 MIR7515-201ENST00000637837 67 ntBASIC3.15□□□□□ -1.91
COL17A1Q9UMD9 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL17A1Q9UMD9 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 SNORD116-10-201ENST00000363791 102 ntBASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 RNU4-67P-201ENST00000364569 141 ntBASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 RNU1-51P-201ENST00000365345 176 ntBASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 MIR218-1-201ENST00000384999 110 ntBASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 RNU2-40P-201ENST00000410833 196 ntBASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 RPL30P4-201ENST00000429309 333 ntBASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 RNU1-131P-201ENST00000458943 161 ntBASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 MIR3199-1-201ENST00000582434 88 ntBASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 MIR3117-201ENST00000584034 78 ntBASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 Y_RNA.783-201ENST00000613546 102 ntBASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL17A1Q9UMD9 CD24P4-201ENST00000382840 243 ntBASIC3.13□□□□□ -1.91
COL17A1Q9UMD9 RNU6-524P-201ENST00000384270 107 ntBASIC3.13□□□□□ -1.91
COL17A1Q9UMD9 MIR518F-201ENST00000384973 87 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms