Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 SNORD115-26-201ENST00000365067 82 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 SNORD115-10-201ENST00000365073 81 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 SNORD115-43-201ENST00000365503 82 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 SNORD115-36-201ENST00000365629 82 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 Y_RNA.528-201ENST00000384575 108 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 MIR660-201ENST00000385235 97 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 Y_RNA.649-201ENST00000459077 103 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 RNU7-34P-201ENST00000459394 64 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 COX6CP6-201ENST00000490840 228 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 PDCD5P2-201ENST00000507570 312 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 RNU6-240P-201ENST00000516098 97 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 MIR4778-201ENST00000577635 80 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 SNORD115-40-201ENST00000606510 82 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 MIR6840-201ENST00000611937 71 ntBASIC2.35□□□□□ -2.03
BRF1Q92994 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.35□□□□□ -2.03
BRF1Q92994 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
BRF1Q92994 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
BRF1Q92994 RNY1P6-201ENST00000384193 109 ntBASIC2.34□□□□□ -2.03
BRF1Q92994 SNORA27-201ENST00000384323 126 ntBASIC2.34□□□□□ -2.03
BRF1Q92994 RNU6-360P-201ENST00000390944 104 ntBASIC2.34□□□□□ -2.03
BRF1Q92994 U8.17-201ENST00000391292 132 ntBASIC2.34□□□□□ -2.03
BRF1Q92994 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.04
BRF1Q92994 RNU6-690P-201ENST00000365242 106 ntBASIC2.33□□□□□ -2.04
BRF1Q92994 RNU6-880P-201ENST00000384526 107 ntBASIC2.33□□□□□ -2.04
BRF1Q92994 RNU7-96P-201ENST00000459535 64 ntBASIC2.33□□□□□ -2.04
BRF1Q92994 AC055731.1-201ENST00000474387 401 ntBASIC2.33□□□□□ -2.04
BRF1Q92994 AC079804.2-201ENST00000490376 200 ntBASIC2.33□□□□□ -2.04
BRF1Q92994 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.33□□□□□ -2.04
BRF1Q92994 AC091932.4-201ENST00000623386 200 ntBASIC2.33□□□□□ -2.04
BRF1Q92994 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.33□□□□□ -2.04
BRF1Q92994 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
BRF1Q92994 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
BRF1Q92994 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
BRF1Q92994 MIR424-201ENST00000362227 98 ntBASIC2.32□□□□□ -2.04
BRF1Q92994 Y_RNA.35-201ENST00000362601 101 ntBASIC2.32□□□□□ -2.04
BRF1Q92994 Y_RNA.241-201ENST00000364470 117 ntBASIC2.32□□□□□ -2.04
BRF1Q92994 SNORA1.2-201ENST00000365189 134 ntBASIC2.32□□□□□ -2.04
BRF1Q92994 MIR570-201ENST00000384917 97 ntBASIC2.32□□□□□ -2.04
BRF1Q92994 MIR136-201ENST00000385207 82 ntBASIC2.32□□□□□ -2.04
BRF1Q92994 SNORD23.1-201ENST00000408212 104 ntBASIC2.32□□□□□ -2.04
BRF1Q92994 MIR1267-201ENST00000408723 78 ntBASIC2.32□□□□□ -2.04
BRF1Q92994 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.32□□□□□ -2.04
BRF1Q92994 PGBD4P5-201ENST00000445958 426 ntBASIC2.32□□□□□ -2.04
BRF1Q92994 RNU6-998P-201ENST00000515894 101 ntBASIC2.32□□□□□ -2.04
BRF1Q92994 RNU6-301P-201ENST00000384277 107 ntBASIC2.31□□□□□ -2.04
BRF1Q92994 RPS29P24-201ENST00000486345 171 ntBASIC2.31□□□□□ -2.04
BRF1Q92994 MIR5694-201ENST00000581190 76 ntBASIC2.31□□□□□ -2.04
BRF1Q92994 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.3□□□□□ -2.04
BRF1Q92994 RNA5SP126-201ENST00000365092 109 ntBASIC2.3□□□□□ -2.04
BRF1Q92994 Y_RNA.494-201ENST00000384432 111 ntBASIC2.3□□□□□ -2.04
BRF1Q92994 MIR548A1-201ENST00000385041 97 ntBASIC2.3□□□□□ -2.04
BRF1Q92994 AC093850.1-201ENST00000454121 251 ntBASIC2.3□□□□□ -2.04
BRF1Q92994 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.3□□□□□ -2.04
BRF1Q92994 SNORA31.17-201ENST00000516953 127 ntBASIC2.3□□□□□ -2.04
BRF1Q92994 RNU7-181P-201ENST00000517234 74 ntBASIC2.3□□□□□ -2.04
BRF1Q92994 MIR3683-201ENST00000580847 82 ntBASIC2.3□□□□□ -2.04
BRF1Q92994 SNORD3E-202ENST00000627253 216 ntBASIC2.3□□□□□ -2.04
BRF1Q92994 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.3□□□□□ -2.04
BRF1Q92994 AC008555.8-201ENST00000623602 2168 ntBASIC2.3□□□□□ -2.04
BRF1Q92994 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.29□□□□□ -2.04
BRF1Q92994 SNORA63.4-201ENST00000362763 126 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 U8.2-201ENST00000363156 134 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 Y_RNA.198-201ENST00000364013 98 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 SNORA22-201ENST00000383907 134 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 SNORA6-201ENST00000384033 151 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 MIR516B2-201ENST00000385190 85 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 RNA5SP212-201ENST00000391223 107 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
BRF1Q92994 AC107297.1-201ENST00000459991 176 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 AC090821.2-201ENST00000523552 176 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 MIR4648-201ENST00000580107 72 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 AC021443.1-201ENST00000604478 211 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 AL391516.1-201ENST00000554380 2449 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 AL596211.1-201ENST00000569873 2277 ntBASIC2.29□□□□□ -2.04
BRF1Q92994 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
BRF1Q92994 ICE2P2-201ENST00000483823 2787 ntBASIC2.28□□□□□ -2.04
BRF1Q92994 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.28□□□□□ -2.04
BRF1Q92994 RN7SKP192-201ENST00000411291 327 ntBASIC2.28□□□□□ -2.04
BRF1Q92994 HMGN2P38-201ENST00000423806 265 ntBASIC2.28□□□□□ -2.04
BRF1Q92994 AL035398.1-201ENST00000430869 322 ntBASIC2.28□□□□□ -2.04
BRF1Q92994 RNU2-13P-201ENST00000515909 113 ntBASIC2.28□□□□□ -2.04
BRF1Q92994 RNY4P20-201ENST00000516678 93 ntBASIC2.28□□□□□ -2.04
BRF1Q92994 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
BRF1Q92994 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.28□□□□□ -2.04
BRF1Q92994 RNU6-1123P-201ENST00000362347 106 ntBASIC2.27□□□□□ -2.05
BRF1Q92994 Y_RNA.281-201ENST00000364774 94 ntBASIC2.27□□□□□ -2.05
BRF1Q92994 Y_RNA.298-201ENST00000364960 107 ntBASIC2.27□□□□□ -2.05
BRF1Q92994 Y_RNA.370-201ENST00000365589 108 ntBASIC2.27□□□□□ -2.05
BRF1Q92994 MIR526A1-201ENST00000384897 85 ntBASIC2.27□□□□□ -2.05
BRF1Q92994 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
BRF1Q92994 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.27□□□□□ -2.05
BRF1Q92994 MIR4679-2-201ENST00000578358 77 ntBASIC2.27□□□□□ -2.05
BRF1Q92994 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
BRF1Q92994 SNORA24-201ENST00000384096 131 ntBASIC2.26□□□□□ -2.05
BRF1Q92994 SNORA31.4-201ENST00000516049 129 ntBASIC2.26□□□□□ -2.05
BRF1Q92994 RNU6-412P-201ENST00000516434 106 ntBASIC2.26□□□□□ -2.05
BRF1Q92994 AC007012.1-201ENST00000567192 175 ntBASIC2.26□□□□□ -2.05
BRF1Q92994 MIR4305-201ENST00000583252 102 ntBASIC2.26□□□□□ -2.05
BRF1Q92994 MIR3935-201ENST00000583472 104 ntBASIC2.26□□□□□ -2.05
BRF1Q92994 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 180.1 ms