Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
USP48Q86UV5 RNU6-833P-201ENST00000363486 107 ntBASIC2.56□□□□□ -2
USP48Q86UV5 SNORA16B-201ENST00000364674 135 ntBASIC2.56□□□□□ -2
USP48Q86UV5 MIR548O-201ENST00000408583 114 ntBASIC2.56□□□□□ -2
USP48Q86UV5 AL021397.1-201ENST00000451806 248 ntBASIC2.56□□□□□ -2
USP48Q86UV5 RNU7-12P-201ENST00000516030 62 ntBASIC2.56□□□□□ -2
USP48Q86UV5 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.56□□□□□ -2
USP48Q86UV5 AC121758.2-201ENST00000553271 193 ntBASIC2.56□□□□□ -2
USP48Q86UV5 AC009831.4-201ENST00000620744 325 ntBASIC2.56□□□□□ -2
USP48Q86UV5 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USP48Q86UV5 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.55□□□□□ -2
USP48Q86UV5 SNORA40.18-201ENST00000391200 128 ntBASIC2.55□□□□□ -2
USP48Q86UV5 AC099513.1-201ENST00000490423 301 ntBASIC2.55□□□□□ -2
USP48Q86UV5 RNU6-1149P-201ENST00000516810 97 ntBASIC2.55□□□□□ -2
USP48Q86UV5 SNORA22-201ENST00000383907 134 ntBASIC2.54□□□□□ -2
USP48Q86UV5 SNORD38C-201ENST00000384381 69 ntBASIC2.54□□□□□ -2
USP48Q86UV5 MIR583-201ENST00000384846 75 ntBASIC2.54□□□□□ -2
USP48Q86UV5 SNORA17.3-201ENST00000391159 129 ntBASIC2.54□□□□□ -2
USP48Q86UV5 MIR4287-201ENST00000579398 78 ntBASIC2.54□□□□□ -2
USP48Q86UV5 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.54□□□□□ -2
USP48Q86UV5 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.53□□□□□ -2
USP48Q86UV5 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.53□□□□□ -2
USP48Q86UV5 Y_RNA.35-201ENST00000362601 101 ntBASIC2.53□□□□□ -2
USP48Q86UV5 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.53□□□□□ -2
USP48Q86UV5 PGBD4P5-201ENST00000445958 426 ntBASIC2.53□□□□□ -2
USP48Q86UV5 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.53□□□□□ -2
USP48Q86UV5 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
USP48Q86UV5 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
USP48Q86UV5 RNU6-1298P-201ENST00000362456 101 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 MIR660-201ENST00000385235 97 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 SNORA48.3-201ENST00000391081 134 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 RNA5SP338-201ENST00000410495 85 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 RNU6-938P-201ENST00000411285 103 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 AC090255.1-201ENST00000495779 349 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 RNU7-25P-201ENST00000516544 62 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 AL670379.3-201ENST00000605040 251 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 AC025166.1-201ENST00000612411 163 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 MIR6895-201ENST00000613497 78 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 AL773524.1-201ENST00000614065 229 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
USP48Q86UV5 MTND5P18-201ENST00000445624 1801 ntBASIC2.52□□□□□ -2.01
USP48Q86UV5 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
USP48Q86UV5 Y_RNA.547-201ENST00000384654 119 ntBASIC2.51□□□□□ -2.01
USP48Q86UV5 AC244636.1-201ENST00000421152 228 ntBASIC2.51□□□□□ -2.01
USP48Q86UV5 RNU6-717P-201ENST00000459076 104 ntBASIC2.51□□□□□ -2.01
USP48Q86UV5 RNA5SP233-201ENST00000459153 113 ntBASIC2.51□□□□□ -2.01
USP48Q86UV5 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.51□□□□□ -2.01
USP48Q86UV5 MIR6840-201ENST00000611937 71 ntBASIC2.51□□□□□ -2.01
USP48Q86UV5 Y_RNA.783-201ENST00000613546 102 ntBASIC2.51□□□□□ -2.01
USP48Q86UV5 AC015726.2-201ENST00000620112 122 ntBASIC2.51□□□□□ -2.01
USP48Q86UV5 SNORD3E-202ENST00000627253 216 ntBASIC2.51□□□□□ -2.01
USP48Q86UV5 MIR424-201ENST00000362227 98 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 RNA5SP160-201ENST00000364866 120 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 SNORD116-21-201ENST00000384507 92 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 MIR17-201ENST00000385012 84 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 MIR548A1-201ENST00000385041 97 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 AC019129.1-201ENST00000403786 261 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 MTATP6P21-201ENST00000440681 189 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 IGLV3-17-201ENST00000519099 244 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 MIR5197-201ENST00000583721 112 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 AC134878.1-201ENST00000619901 243 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 ICE2P2-201ENST00000483823 2787 ntBASIC2.5□□□□□ -2.01
USP48Q86UV5 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
USP48Q86UV5 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
USP48Q86UV5 Y_RNA.118-201ENST00000363300 101 ntBASIC2.49□□□□□ -2.01
USP48Q86UV5 SNORD115-28-201ENST00000363931 81 ntBASIC2.49□□□□□ -2.01
USP48Q86UV5 RNU6-147P-201ENST00000383983 107 ntBASIC2.49□□□□□ -2.01
USP48Q86UV5 MIR452-201ENST00000385020 85 ntBASIC2.49□□□□□ -2.01
USP48Q86UV5 MIR548A3-201ENST00000385297 97 ntBASIC2.49□□□□□ -2.01
USP48Q86UV5 AC015922.2-201ENST00000435593 184 ntBASIC2.49□□□□□ -2.01
USP48Q86UV5 MIR3613-201ENST00000579844 87 ntBASIC2.49□□□□□ -2.01
USP48Q86UV5 snoU13.31-201ENST00000607291 104 ntBASIC2.49□□□□□ -2.01
USP48Q86UV5 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
USP48Q86UV5 RNU6-1123P-201ENST00000362347 106 ntBASIC2.48□□□□□ -2.01
USP48Q86UV5 Y_RNA.37-201ENST00000362606 108 ntBASIC2.48□□□□□ -2.01
USP48Q86UV5 Y_RNA.366-201ENST00000365540 102 ntBASIC2.48□□□□□ -2.01
USP48Q86UV5 MIR144-201ENST00000384886 86 ntBASIC2.48□□□□□ -2.01
USP48Q86UV5 RPL23AP6-201ENST00000446637 472 ntBASIC2.48□□□□□ -2.01
USP48Q86UV5 Y_RNA.649-201ENST00000459077 103 ntBASIC2.48□□□□□ -2.01
USP48Q86UV5 SNORD36C-201ENST00000516733 66 ntBASIC2.48□□□□□ -2.01
USP48Q86UV5 AC002984.1-201ENST00000591692 448 ntBASIC2.48□□□□□ -2.01
USP48Q86UV5 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
USP48Q86UV5 AL442644.1-201ENST00000454390 3105 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 RNU6-414P-201ENST00000363705 104 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 Y_RNA.346-201ENST00000365385 112 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 RNA5SP37-201ENST00000365420 130 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 Y_RNA.410-201ENST00000383992 113 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 MIR1263-201ENST00000408324 86 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 AC093850.1-201ENST00000454121 251 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 AC079804.2-201ENST00000490376 200 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 RPS26P48-201ENST00000491713 339 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 AC022254.1-201ENST00000567857 235 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 MIR4778-201ENST00000577635 80 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 MIR5694-201ENST00000581190 76 ntBASIC2.47□□□□□ -2.01
USP48Q86UV5 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.47□□□□□ -2.01
USP48Q86UV5 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
USP48Q86UV5 MIR378A-201ENST00000362177 66 ntBASIC2.46□□□□□ -2.02
USP48Q86UV5 RNA5SP138-201ENST00000365098 114 ntBASIC2.46□□□□□ -2.02
USP48Q86UV5 Y_RNA.355-201ENST00000365462 98 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms