Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-451P-201ENST00000362921 107 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-1252P-201ENST00000363054 104 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-626P-201ENST00000363354 107 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.404-201ENST00000383978 102 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 MIR601-201ENST00000385256 79 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 SNORA26.6-201ENST00000391256 115 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.621-201ENST00000411065 96 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 AC015818.7-201ENST00000428754 109 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 AC087499.7-201ENST00000441958 109 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-307P-201ENST00000516743 106 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 RNU2-60P-201ENST00000517290 128 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 AC127455.1-201ENST00000565496 145 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 MIR4263-201ENST00000584745 83 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 Z99129.1-201ENST00000612510 255 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 FTX_2.1-201ENST00000618816 94 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.230-201ENST00000364348 109 ntBASIC-0.49□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-702P-201ENST00000364982 107 ntBASIC-0.49□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-127P-201ENST00000390897 107 ntBASIC-0.49□□□□□ -2.49
CCDC88AQ3V6T2 RNA5SP163-201ENST00000410304 99 ntBASIC-0.49□□□□□ -2.49
CCDC88AQ3V6T2 MTATP6P17-201ENST00000431030 672 ntBASIC-0.49□□□□□ -2.49
CCDC88AQ3V6T2 MIR2053-201ENST00000459295 91 ntBASIC-0.49□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-998P-201ENST00000515894 101 ntBASIC-0.49□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-470P-201ENST00000515954 104 ntBASIC-0.49□□□□□ -2.49
CCDC88AQ3V6T2 MIR3681-201ENST00000580089 72 ntBASIC-0.49□□□□□ -2.49
CCDC88AQ3V6T2 MIR3925-201ENST00000584674 77 ntBASIC-0.49□□□□□ -2.49
CCDC88AQ3V6T2 AC010332.2-201ENST00000613083 1904 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 MIR30D-201ENST00000362283 70 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.339-201ENST00000365325 102 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-144P-201ENST00000383951 107 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.450-201ENST00000384198 113 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.631-201ENST00000459607 101 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-475P-201ENST00000516073 104 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 AC092447.9-201ENST00000603395 144 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 MIRLET7F2-201ENST00000385277 83 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 RNU6ATAC25P-201ENST00000408798 117 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-956P-201ENST00000458868 103 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 PRDX4P1-201ENST00000507189 574 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 MIR4723-201ENST00000585070 81 ntBASIC-0.5□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-879P-201ENST00000364328 108 ntBASIC-0.51□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-1119P-201ENST00000384349 108 ntBASIC-0.51□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.51□□□□□ -2.49
CCDC88AQ3V6T2 AC096949.1-201ENST00000412047 152 ntBASIC-0.51□□□□□ -2.49
CCDC88AQ3V6T2 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.51□□□□□ -2.49
CCDC88AQ3V6T2 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.51□□□□□ -2.49
CCDC88AQ3V6T2 NAMPTP3-201ENST00000569273 224 ntBASIC-0.51□□□□□ -2.49
CCDC88AQ3V6T2 AL080274.1-201ENST00000605565 220 ntBASIC-0.51□□□□□ -2.49
CCDC88AQ3V6T2 uc_338.28-201ENST00000612082 187 ntBASIC-0.51□□□□□ -2.49
CCDC88AQ3V6T2 MIR499B-201ENST00000636498 73 ntBASIC-0.51□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.146-201ENST00000363549 102 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-1209P-201ENST00000363655 107 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.553-201ENST00000384670 102 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 MIR181A1-201ENST00000385026 110 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 SNORD78.2-201ENST00000391076 69 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-908P-201ENST00000410160 94 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 MIR3152-201ENST00000579801 74 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 SNORD72-201ENST00000390994 80 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 AC074085.1-201ENST00000413598 418 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 MTND1P1-201ENST00000445453 368 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-1281P-201ENST00000516223 105 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 RNU7-25P-201ENST00000516544 62 ntBASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.52□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.72-201ENST00000362894 103 ntBASIC-0.53□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.53□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.53□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.570-201ENST00000384750 101 ntBASIC-0.53□□□□□ -2.49
CCDC88AQ3V6T2 PCNPP3-201ENST00000393579 471 ntBASIC-0.53□□□□□ -2.49
CCDC88AQ3V6T2 DEFB108C-201ENST00000400154 252 ntBASIC-0.53□□□□□ -2.49
CCDC88AQ3V6T2 RNU7-141P-201ENST00000459304 62 ntBASIC-0.53□□□□□ -2.49
CCDC88AQ3V6T2 MIR4677-201ENST00000584153 80 ntBASIC-0.53□□□□□ -2.49
CCDC88AQ3V6T2 MIR548AY-201ENST00000617669 107 ntBASIC-0.53□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.331-201ENST00000365267 102 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 RNY3-201ENST00000365484 102 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 SNORA26.5-201ENST00000391215 123 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 SNORA26-201ENST00000391286 122 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 SNORA36B-201ENST00000410438 131 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 AC144568.1-201ENST00000520139 137 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 AC011921.3-201ENST00000605540 361 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 MIR6082-201ENST00000613604 109 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 RNU6-1048P-201ENST00000364054 107 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 RNU6-20P-201ENST00000384106 107 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 RNU6-1248P-201ENST00000391096 64 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 SNORD77.3-201ENST00000391113 65 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 Y_RNA.615-201ENST00000410769 117 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 AL138752.1-201ENST00000452964 351 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 AC010424.1-201ENST00000506336 297 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 RNU7-129P-201ENST00000516128 62 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 AP003733.2-201ENST00000529409 171 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 MIR378D2-201ENST00000580636 98 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 AC245008.1-201ENST00000608123 476 ntBASIC-0.54□□□□□ -2.5
CCDC88AQ3V6T2 Y_RNA.37-201ENST00000362606 108 ntBASIC-0.55□□□□□ -2.5
CCDC88AQ3V6T2 Y_RNA.241-201ENST00000364470 117 ntBASIC-0.55□□□□□ -2.5
CCDC88AQ3V6T2 RNU6-187P-201ENST00000384139 106 ntBASIC-0.55□□□□□ -2.5
CCDC88AQ3V6T2 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-0.55□□□□□ -2.5
CCDC88AQ3V6T2 MTND1P34-201ENST00000438556 671 ntBASIC-0.55□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 244.4 ms