Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 RNU6-311P-201ENST00000516224 102 ntBASIC-1.15□□□□□ -2.59
SDC4P31431 SNORD38.3-201ENST00000516599 73 ntBASIC-1.15□□□□□ -2.59
SDC4P31431 RNU6-881P-201ENST00000516813 102 ntBASIC-1.15□□□□□ -2.59
SDC4P31431 MIR548AY-201ENST00000617669 107 ntBASIC-1.15□□□□□ -2.59
SDC4P31431 MIR342-201ENST00000362212 99 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 RNU6-653P-201ENST00000363074 106 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 Y_RNA.135-201ENST00000363439 95 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 Y_RNA.221-201ENST00000364248 96 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 RNU6-35P-201ENST00000384530 107 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 MIR626-201ENST00000385032 94 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-1.16□□□□□ -2.6
SDC4P31431 AC023449.1-201ENST00000454464 154 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 MTND2P39-201ENST00000457230 764 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 MIR2681-201ENST00000581814 105 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 AC124312.5-201ENST00000604451 268 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 AC005014.2-201ENST00000607795 599 ntBASIC-1.16□□□□□ -2.6
SDC4P31431 Y_RNA.72-201ENST00000362894 103 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 SNORD114-25-201ENST00000363742 72 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 Y_RNA.212-201ENST00000364177 102 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 Y_RNA.231-201ENST00000364358 102 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 RNY1P13-201ENST00000365030 105 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 RNU6-1103P-201ENST00000384150 107 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 RNY1P7-201ENST00000384743 110 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 MIR181B2-201ENST00000385004 89 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.17□□□□□ -2.6
SDC4P31431 AC021146.6-201ENST00000514659 117 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 Y_RNA.665-201ENST00000516177 98 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC-1.17□□□□□ -2.6
SDC4P31431 AC024933.1-201ENST00000608472 348 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 AC022960.3-201ENST00000619794 441 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 AC022140.2-201ENST00000623500 188 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 AF246928.1-201ENST00000623768 87 ntBASIC-1.17□□□□□ -2.6
SDC4P31431 SNORD95.1-201ENST00000364099 68 ntBASIC-1.18□□□□□ -2.6
SDC4P31431 MIR548A2-201ENST00000384956 97 ntBASIC-1.18□□□□□ -2.6
SDC4P31431 SNORD83B-201ENST00000386745 93 ntBASIC-1.18□□□□□ -2.6
SDC4P31431 Y_RNA.615-201ENST00000410769 117 ntBASIC-1.18□□□□□ -2.6
SDC4P31431 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC-1.18□□□□□ -2.6
SDC4P31431 RNU7-66P-201ENST00000459469 62 ntBASIC-1.18□□□□□ -2.6
SDC4P31431 RNU7-149P-201ENST00000516739 59 ntBASIC-1.18□□□□□ -2.6
SDC4P31431 AC027449.1-201ENST00000608890 407 ntBASIC-1.18□□□□□ -2.6
SDC4P31431 RNA5SP133-201ENST00000363368 119 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 RNU6-509P-201ENST00000363519 107 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 RNU6-553P-201ENST00000364047 96 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 MIR539-201ENST00000365690 78 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 Y_RNA.436-201ENST00000384097 102 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 RNU6-20P-201ENST00000384106 107 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-1.19□□□□□ -2.6
SDC4P31431 RNU6-648P-201ENST00000410190 107 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 SNORA36B-201ENST00000410438 131 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 RNU7-96P-201ENST00000459535 64 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 RNU6-256P-201ENST00000516747 97 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.19□□□□□ -2.6
SDC4P31431 MTATP6P24-201ENST00000576835 677 ntBASIC-1.19□□□□□ -2.6
SDC4P31431 Y_RNA.242-201ENST00000364473 110 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 Y_RNA.456-201ENST00000384232 111 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 Y_RNA.587-201ENST00000391210 103 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 RNU6-721P-201ENST00000410155 105 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-1.2□□□□□ -2.6
SDC4P31431 AC098826.2-201ENST00000452011 651 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 AC091951.2-201ENST00000500762 203 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 RNU6-1007P-201ENST00000516586 107 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 RNU6-835P-201ENST00000516974 104 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 AP001328.1-201ENST00000528550 176 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 MIR3915-201ENST00000578518 97 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 AC022441.3-201ENST00000605737 136 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 AC107308.1-201ENST00000615897 301 ntBASIC-1.2□□□□□ -2.6
SDC4P31431 Y_RNA.56-201ENST00000362798 112 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 RNU4-58P-201ENST00000363192 141 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 Y_RNA.409-201ENST00000383990 98 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 SNORD116-9-201ENST00000384000 95 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 SNORD116-3-201ENST00000384287 95 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 SNORD116-8-201ENST00000384365 95 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 SNORD116-7-201ENST00000384404 95 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 SNORD116-5-201ENST00000384462 95 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 MT-TH-201ENST00000387441 69 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 MIR1265-201ENST00000408444 86 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 SPINT5P-201ENST00000448174 155 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 AL500527.2-201ENST00000454105 95 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 AC083798.1-201ENST00000472671 131 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 RNU6-1129P-201ENST00000515964 104 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 RNU2-31P-201ENST00000516954 155 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 RNU6-232P-201ENST00000517144 64 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC-1.21□□□□□ -2.6
SDC4P31431 MIR548AE1-201ENST00000583292 70 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 AC040904.1-201ENST00000590850 223 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 AL080274.1-201ENST00000605565 220 ntBASIC-1.21□□□□□ -2.6
SDC4P31431 RNU6-626P-201ENST00000363354 107 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 Y_RNA.169-201ENST00000363745 96 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 SNORD116-11-201ENST00000383882 92 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 Y_RNA.433-201ENST00000384089 102 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 RNU6-1201P-201ENST00000384227 107 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 Y_RNA.473-201ENST00000384333 102 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 RNU6-901P-201ENST00000384593 106 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 RNU6-1068P-201ENST00000410958 103 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 RNU2-14P-201ENST00000411053 191 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 MTND1P27-201ENST00000451117 902 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-1.22□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms