Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SNORD115-13-201ENST00000363358 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-41-201ENST00000363608 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-11-201ENST00000363616 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-5-201ENST00000363633 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-39-201ENST00000363694 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-4-201ENST00000363810 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-16-201ENST00000363887 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-6-201ENST00000363942 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-42-201ENST00000364273 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-15-201ENST00000364809 81 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-1-201ENST00000364961 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-26-201ENST00000365067 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-10-201ENST00000365073 81 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-43-201ENST00000365503 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-36-201ENST00000365629 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 MIR1302-4-201ENST00000408701 150 ntBASIC2.66□□□□□ -1.98
LIG1P18858 AL035398.1-201ENST00000430869 322 ntBASIC2.66□□□□□ -1.98
LIG1P18858 RNU7-96P-201ENST00000459535 64 ntBASIC2.66□□□□□ -1.98
LIG1P18858 RNU6-998P-201ENST00000515894 101 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORA40.13-201ENST00000516379 120 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SNORD115-40-201ENST00000606510 82 ntBASIC2.66□□□□□ -1.98
LIG1P18858 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
LIG1P18858 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.65□□□□□ -1.99
LIG1P18858 Y_RNA.241-201ENST00000364470 117 ntBASIC2.65□□□□□ -1.99
LIG1P18858 RNA5SP126-201ENST00000365092 109 ntBASIC2.65□□□□□ -1.99
LIG1P18858 SNORA51.10-201ENST00000384418 136 ntBASIC2.65□□□□□ -1.99
LIG1P18858 RNU11-3P-201ENST00000391111 133 ntBASIC2.65□□□□□ -1.99
LIG1P18858 HSPE1P9-201ENST00000440046 311 ntBASIC2.65□□□□□ -1.99
LIG1P18858 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.65□□□□□ -1.99
LIG1P18858 AC022523.2-201ENST00000561045 150 ntBASIC2.65□□□□□ -1.99
LIG1P18858 SNORD53-201ENST00000579969 78 ntBASIC2.65□□□□□ -1.99
LIG1P18858 HSPE1P19-201ENST00000603327 295 ntBASIC2.65□□□□□ -1.99
LIG1P18858 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.65□□□□□ -1.99
LIG1P18858 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
LIG1P18858 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.64□□□□□ -1.99
LIG1P18858 U8.16-201ENST00000391279 133 ntBASIC2.64□□□□□ -1.99
LIG1P18858 AL356379.1-201ENST00000414105 126 ntBASIC2.64□□□□□ -1.99
LIG1P18858 SNORA31.4-201ENST00000516049 129 ntBASIC2.64□□□□□ -1.99
LIG1P18858 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.64□□□□□ -1.99
LIG1P18858 MIR514B-201ENST00000516774 80 ntBASIC2.64□□□□□ -1.99
LIG1P18858 AC103810.6-201ENST00000606708 136 ntBASIC2.64□□□□□ -1.99
LIG1P18858 Y_RNA.818-201ENST00000618813 71 ntBASIC2.64□□□□□ -1.99
LIG1P18858 MIR342-201ENST00000362212 99 ntBASIC2.63□□□□□ -1.99
LIG1P18858 Y_RNA.494-201ENST00000384432 111 ntBASIC2.63□□□□□ -1.99
LIG1P18858 MIR590-201ENST00000385008 97 ntBASIC2.63□□□□□ -1.99
LIG1P18858 HMGN2P39-201ENST00000398005 273 ntBASIC2.63□□□□□ -1.99
LIG1P18858 MIR1283-2-201ENST00000408621 87 ntBASIC2.63□□□□□ -1.99
LIG1P18858 RNA5SP144-201ENST00000410846 116 ntBASIC2.63□□□□□ -1.99
LIG1P18858 RNA5SP168-201ENST00000516642 112 ntBASIC2.63□□□□□ -1.99
LIG1P18858 AL162726.3-218ENST00000636401 95 ntBASIC2.63□□□□□ -1.99
LIG1P18858 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
LIG1P18858 AL359851.1-201ENST00000569460 4997 ntBASIC2.62□□□□□ -1.99
LIG1P18858 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.62□□□□□ -1.99
LIG1P18858 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
LIG1P18858 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
LIG1P18858 RNU6-301P-201ENST00000384277 107 ntBASIC2.62□□□□□ -1.99
LIG1P18858 RNU6-1031P-201ENST00000384773 107 ntBASIC2.62□□□□□ -1.99
LIG1P18858 RNA5SP465-201ENST00000391195 109 ntBASIC2.62□□□□□ -1.99
LIG1P18858 SNX2P2-201ENST00000424553 323 ntBASIC2.62□□□□□ -1.99
LIG1P18858 AC104435.1-201ENST00000483483 166 ntBASIC2.62□□□□□ -1.99
LIG1P18858 RNU6-158P-201ENST00000517104 100 ntBASIC2.62□□□□□ -1.99
LIG1P18858 AC090821.2-201ENST00000523552 176 ntBASIC2.62□□□□□ -1.99
LIG1P18858 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
LIG1P18858 RNA5SP276-201ENST00000362580 94 ntBASIC2.61□□□□□ -1.99
LIG1P18858 RNU4-16P-201ENST00000364737 141 ntBASIC2.61□□□□□ -1.99
LIG1P18858 MIR597-201ENST00000384968 97 ntBASIC2.61□□□□□ -1.99
LIG1P18858 MIR1267-201ENST00000408723 78 ntBASIC2.61□□□□□ -1.99
LIG1P18858 MIR1912-201ENST00000410389 80 ntBASIC2.61□□□□□ -1.99
LIG1P18858 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.61□□□□□ -1.99
LIG1P18858 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.61□□□□□ -1.99
LIG1P18858 RNA5SP233-201ENST00000459153 113 ntBASIC2.61□□□□□ -1.99
LIG1P18858 AC079804.2-201ENST00000490376 200 ntBASIC2.61□□□□□ -1.99
LIG1P18858 RNU6-904P-201ENST00000516206 101 ntBASIC2.61□□□□□ -1.99
LIG1P18858 RNU6-970P-201ENST00000516312 107 ntBASIC2.61□□□□□ -1.99
LIG1P18858 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.61□□□□□ -1.99
LIG1P18858 AC021613.1-201ENST00000623880 111 ntBASIC2.61□□□□□ -1.99
LIG1P18858 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.6□□□□□ -1.99
LIG1P18858 MIR302B-201ENST00000362188 73 ntBASIC2.6□□□□□ -1.99
LIG1P18858 RNU6-294P-201ENST00000364999 102 ntBASIC2.6□□□□□ -1.99
LIG1P18858 RNU4-52P-201ENST00000384209 138 ntBASIC2.6□□□□□ -1.99
LIG1P18858 SNORA67.4-201ENST00000384688 142 ntBASIC2.6□□□□□ -1.99
LIG1P18858 MIR676-201ENST00000390702 67 ntBASIC2.6□□□□□ -1.99
LIG1P18858 AL022718.1-201ENST00000412004 84 ntBASIC2.6□□□□□ -1.99
LIG1P18858 RNU7-12P-201ENST00000516030 62 ntBASIC2.6□□□□□ -1.99
LIG1P18858 RNU7-6P-201ENST00000516845 62 ntBASIC2.6□□□□□ -1.99
LIG1P18858 RNU7-181P-201ENST00000517234 74 ntBASIC2.6□□□□□ -1.99
LIG1P18858 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.6□□□□□ -1.99
LIG1P18858 SUB1P4-201ENST00000566062 339 ntBASIC2.6□□□□□ -1.99
LIG1P18858 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.6□□□□□ -1.99
LIG1P18858 MIR6766-201ENST00000622641 72 ntBASIC2.6□□□□□ -1.99
LIG1P18858 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.6□□□□□ -1.99
LIG1P18858 SNORA1.2-201ENST00000365189 134 ntBASIC2.59□□□□□ -1.99
LIG1P18858 SNORA4.2-201ENST00000365313 147 ntBASIC2.59□□□□□ -1.99
LIG1P18858 SNORA48.1-201ENST00000390879 135 ntBASIC2.59□□□□□ -1.99
LIG1P18858 SNORA19.1-201ENST00000410656 129 ntBASIC2.59□□□□□ -1.99
LIG1P18858 RNU4-53P-201ENST00000410828 140 ntBASIC2.59□□□□□ -1.99
LIG1P18858 HMGN2P3-201ENST00000433603 273 ntBASIC2.59□□□□□ -1.99
LIG1P18858 HMGN2P5-201ENST00000436882 273 ntBASIC2.59□□□□□ -1.99
LIG1P18858 RNU2-11P-201ENST00000459191 187 ntBASIC2.59□□□□□ -1.99
LIG1P18858 AC107297.1-201ENST00000459991 176 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms