Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-1067P-201ENST00000384752 107 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 SNORA40-201ENST00000388090 126 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 U8.17-201ENST00000391292 132 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 CYCSP49-201ENST00000420810 319 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 RNU7-197P-201ENST00000458836 62 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 snoU13.9-201ENST00000458927 103 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 RNU4-57P-201ENST00000515980 135 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 SNORA18.7-201ENST00000516910 131 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 RNU7-70P-201ENST00000516941 66 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 AP001328.1-201ENST00000528550 176 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 AC095038.3-201ENST00000634439 195 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 AL442644.1-201ENST00000454390 3105 ntBASIC2.07□□□□□ -2.08
TRIM39Q9HCM9 AC092881.1-201ENST00000638218 2733 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 Y_RNA.120-201ENST00000363304 110 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 Y_RNA.241-201ENST00000364470 117 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 Y_RNA.420-201ENST00000384043 110 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 MIR526A1-201ENST00000384897 85 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 AL627390.1-201ENST00000396055 340 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 AL451046.2-201ENST00000403074 277 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 RNA5SP364-201ENST00000516938 78 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 MIR3198-2-201ENST00000577868 80 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 AC103810.8-201ENST00000607347 118 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 WWP1P1-201ENST00000466609 2769 ntBASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
TRIM39Q9HCM9 Y_RNA.52-201ENST00000362760 96 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 Y_RNA.251-201ENST00000364551 99 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 SNORA40.5-201ENST00000391061 128 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 RPL23AP42-201ENST00000471152 471 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 MIR514B-201ENST00000516774 80 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 IGKV3-31-201ENST00000523109 329 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 AC090049.2-201ENST00000550377 109 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 SNORA77B-201ENST00000578179 125 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 AL096840.1-201ENST00000603287 93 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 TUG1_4.1-201ENST00000619464 181 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 AP001340.1-201ENST00000624405 217 ntBASIC2.05□□□□□ -2.08
TRIM39Q9HCM9 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-34-201ENST00000362441 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-12-201ENST00000362583 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD33-201ENST00000362761 85 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-29-201ENST00000362834 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-9-201ENST00000362912 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-21-201ENST00000362963 81 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-14-201ENST00000363090 81 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-13-201ENST00000363358 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-41-201ENST00000363608 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-11-201ENST00000363616 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-5-201ENST00000363633 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-39-201ENST00000363694 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-4-201ENST00000363810 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-16-201ENST00000363887 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-6-201ENST00000363942 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-42-201ENST00000364273 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-15-201ENST00000364809 81 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-1-201ENST00000364961 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-26-201ENST00000365067 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-10-201ENST00000365073 81 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 RNA5SP138-201ENST00000365098 114 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-43-201ENST00000365503 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-36-201ENST00000365629 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 MIR676-201ENST00000390702 67 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 RNU6-460P-201ENST00000391158 108 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 MIR1261-201ENST00000408659 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD123-201ENST00000459473 70 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 AC015688.6-201ENST00000577737 104 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 MIR3910-1-201ENST00000580936 111 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SNORD115-40-201ENST00000606510 82 ntBASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.04□□□□□ -2.08
TRIM39Q9HCM9 RNU6-915P-201ENST00000364943 103 ntBASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 Y_RNA.370-201ENST00000365589 108 ntBASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 SNORA70.7-201ENST00000384159 133 ntBASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 Y_RNA.454-201ENST00000384224 113 ntBASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 RNU7-80P-201ENST00000459562 61 ntBASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 SNORD36C-201ENST00000516733 66 ntBASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 Y_RNA.757-201ENST00000578934 114 ntBASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 MIR8063-201ENST00000621930 81 ntBASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 AC132825.6-201ENST00000638861 357 ntBASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.03□□□□□ -2.08
TRIM39Q9HCM9 AP000648.3-201ENST00000623539 4507 ntBASIC2.03□□□□□ -2.09
TRIM39Q9HCM9 SNORA27-201ENST00000384323 126 ntBASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 MIR653-201ENST00000385279 96 ntBASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 HSPE1P24-201ENST00000450782 238 ntBASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 HMGN2P23-201ENST00000456759 269 ntBASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 RNU6-917P-201ENST00000516294 104 ntBASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 RNU6-1149P-201ENST00000516810 97 ntBASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 SNORA74.3-201ENST00000517108 154 ntBASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 RNU7-181P-201ENST00000517234 74 ntBASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 U7.2-201ENST00000607576 63 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 182 ms