Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 Y_RNA.242-201ENST00000364473 110 ntBASIC-1.77□□□□□ -2.69
SCAPERQ9BY12 RNY4P7-201ENST00000364600 96 ntBASIC-1.77□□□□□ -2.69
SCAPERQ9BY12 MTCO2P21-201ENST00000419780 677 ntBASIC-1.77□□□□□ -2.69
SCAPERQ9BY12 UBE2D3P4-201ENST00000441973 436 ntBASIC-1.77□□□□□ -2.69
SCAPERQ9BY12 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.77□□□□□ -2.69
SCAPERQ9BY12 RNU6-1332P-201ENST00000516666 104 ntBASIC-1.77□□□□□ -2.69
SCAPERQ9BY12 RNU6-175P-201ENST00000516896 107 ntBASIC-1.77□□□□□ -2.69
SCAPERQ9BY12 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-1.77□□□□□ -2.69
SCAPERQ9BY12 MIR5591-201ENST00000578248 65 ntBASIC-1.77□□□□□ -2.69
SCAPERQ9BY12 MIR3674-201ENST00000636576 68 ntBASIC-1.77□□□□□ -2.69
SCAPERQ9BY12 RNU6-1082P-201ENST00000364574 107 ntBASIC-1.78□□□□□ -2.69
SCAPERQ9BY12 RNY4P36-201ENST00000391116 96 ntBASIC-1.78□□□□□ -2.69
SCAPERQ9BY12 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC-1.78□□□□□ -2.69
SCAPERQ9BY12 AC107027.2-201ENST00000512197 115 ntBASIC-1.78□□□□□ -2.69
SCAPERQ9BY12 snoU83B.1-201ENST00000517136 88 ntBASIC-1.78□□□□□ -2.69
SCAPERQ9BY12 AC026421.1-201ENST00000519101 163 ntBASIC-1.78□□□□□ -2.69
SCAPERQ9BY12 TUSC7.1-201ENST00000610969 165 ntBASIC-1.78□□□□□ -2.69
SCAPERQ9BY12 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.79□□□□□ -2.7
SCAPERQ9BY12 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-1.79□□□□□ -2.7
SCAPERQ9BY12 Y_RNA.637-201ENST00000459424 114 ntBASIC-1.79□□□□□ -2.7
SCAPERQ9BY12 AC006566.1-201ENST00000608943 513 ntBASIC-1.79□□□□□ -2.7
SCAPERQ9BY12 Y_RNA.78-201ENST00000362970 110 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 RNU5F-6P-201ENST00000362979 116 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 RNU6-702P-201ENST00000364982 107 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 RNU6-767P-201ENST00000384132 107 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 AC074085.1-201ENST00000413598 418 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 USP9YP12-201ENST00000450481 570 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 RNU6-732P-201ENST00000516033 103 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 AP000676.1-201ENST00000533307 52 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 Z84480.1-201ENST00000605131 311 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 AC092807.2-201ENST00000609367 243 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 AC087683.2-201ENST00000611384 326 ntBASIC-1.8□□□□□ -2.7
SCAPERQ9BY12 Y_RNA.37-201ENST00000362606 108 ntBASIC-1.81□□□□□ -2.7
SCAPERQ9BY12 RNU6-903P-201ENST00000391270 109 ntBASIC-1.81□□□□□ -2.7
SCAPERQ9BY12 FCF1P4-201ENST00000448326 183 ntBASIC-1.81□□□□□ -2.7
SCAPERQ9BY12 AL133215.3-201ENST00000609801 448 ntBASIC-1.81□□□□□ -2.7
SCAPERQ9BY12 AC027807.2-201ENST00000616099 408 ntBASIC-1.81□□□□□ -2.7
SCAPERQ9BY12 AC007671.2-201ENST00000637344 619 ntBASIC-1.81□□□□□ -2.7
SCAPERQ9BY12 RNU6-501P-201ENST00000364072 100 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 SNORA69-201ENST00000383895 132 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 Y_RNA.547-201ENST00000384654 119 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 SNORA40.5-201ENST00000391061 128 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 MIR8485-201ENST00000401372 91 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 RPL30P15-201ENST00000457129 321 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 RNU6-1114P-201ENST00000516022 107 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 RNU6-276P-201ENST00000516114 96 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 OSBPL9P5-201ENST00000542581 171 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 AL158050.2-201ENST00000605336 568 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 AL354950.2-201ENST00000617939 290 ntBASIC-1.82□□□□□ -2.7
SCAPERQ9BY12 Y_RNA.172-201ENST00000363765 102 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 RNU6-226P-201ENST00000363778 107 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 MIR4770-201ENST00000579149 58 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 MIR5583-1-201ENST00000580941 59 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 MIR4473-201ENST00000583731 91 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 AL589826.1-201ENST00000340697 249 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 AL603914.1-201ENST00000401964 204 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 AL603910.2-201ENST00000407268 136 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 RNU4-55P-201ENST00000410731 137 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 SNORA19.3-201ENST00000516165 130 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 DEFB131E-201ENST00000532329 154 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 AL512506.1-201ENST00000613918 449 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 AL607023.1-201ENST00000620045 248 ntBASIC-1.83□□□□□ -2.7
SCAPERQ9BY12 RNU6-1209P-201ENST00000363655 107 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 SNORD115-30-201ENST00000364117 82 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 MIR539-201ENST00000365690 78 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 RNU6-214P-201ENST00000384130 107 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 RNU6-1310P-201ENST00000384153 107 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 RNU6-1145P-201ENST00000384246 107 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 RNU6-456P-201ENST00000384493 107 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 RNU6-192P-201ENST00000391253 100 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 MTCO2P16-201ENST00000436962 677 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 MTCO2P30-201ENST00000503662 364 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 RNU7-175P-201ENST00000515915 61 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 RNU6-1012P-201ENST00000516606 109 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 AC141846.1-201ENST00000568348 142 ntBASIC-1.84□□□□□ -2.7
SCAPERQ9BY12 Y_RNA.56-201ENST00000362798 112 ntBASIC-1.85□□□□□ -2.71
SCAPERQ9BY12 RNU5E-5P-201ENST00000365379 116 ntBASIC-1.85□□□□□ -2.71
SCAPERQ9BY12 RNU6-949P-201ENST00000384040 107 ntBASIC-1.85□□□□□ -2.71
SCAPERQ9BY12 SNORD72-201ENST00000390994 80 ntBASIC-1.85□□□□□ -2.71
SCAPERQ9BY12 RNU6-1001P-201ENST00000411265 100 ntBASIC-1.85□□□□□ -2.71
SCAPERQ9BY12 RNU7-25P-201ENST00000516544 62 ntBASIC-1.85□□□□□ -2.71
SCAPERQ9BY12 MTATP6P25-201ENST00000574491 261 ntBASIC-1.85□□□□□ -2.71
SCAPERQ9BY12 AC124312.5-201ENST00000604451 268 ntBASIC-1.85□□□□□ -2.71
SCAPERQ9BY12 HULC.1-201ENST00000612720 240 ntBASIC-1.85□□□□□ -2.71
SCAPERQ9BY12 MIR6129-201ENST00000616087 109 ntBASIC-1.85□□□□□ -2.71
SCAPERQ9BY12 RNU4-58P-201ENST00000363192 141 ntBASIC-1.86□□□□□ -2.71
SCAPERQ9BY12 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.86□□□□□ -2.71
SCAPERQ9BY12 RNU6-1190P-201ENST00000410811 104 ntBASIC-1.86□□□□□ -2.71
SCAPERQ9BY12 AL357078.3-201ENST00000607528 618 ntBASIC-1.86□□□□□ -2.71
SCAPERQ9BY12 AC132825.6-201ENST00000638861 357 ntBASIC-1.86□□□□□ -2.71
SCAPERQ9BY12 Y_RNA.329-201ENST00000365209 107 ntBASIC-1.87□□□□□ -2.71
SCAPERQ9BY12 SNORA27-201ENST00000384323 126 ntBASIC-1.87□□□□□ -2.71
SCAPERQ9BY12 RNY3P9-201ENST00000384727 106 ntBASIC-1.87□□□□□ -2.71
SCAPERQ9BY12 MTND1P11-201ENST00000456661 876 ntBASIC-1.87□□□□□ -2.71
SCAPERQ9BY12 RNU6-625P-201ENST00000459412 107 ntBASIC-1.87□□□□□ -2.71
SCAPERQ9BY12 RPS29P24-201ENST00000486345 171 ntBASIC-1.87□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms