Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.19□□□□□ -2.06
SMC1BQ8NDV3 MIRLET7C-201ENST00000362160 84 ntBASIC2.18□□□□□ -2.06
SMC1BQ8NDV3 SNORD114-22-201ENST00000365423 72 ntBASIC2.18□□□□□ -2.06
SMC1BQ8NDV3 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.18□□□□□ -2.06
SMC1BQ8NDV3 AC025033.1-201ENST00000463883 194 ntBASIC2.18□□□□□ -2.06
SMC1BQ8NDV3 RNU6-504P-201ENST00000516568 104 ntBASIC2.18□□□□□ -2.06
SMC1BQ8NDV3 MIR4299-201ENST00000577899 72 ntBASIC2.18□□□□□ -2.06
SMC1BQ8NDV3 MIR378D2-201ENST00000580636 98 ntBASIC2.18□□□□□ -2.06
SMC1BQ8NDV3 Y_RNA.8-201ENST00000362353 102 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 RNU6-833P-201ENST00000363486 107 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 RNU6-449P-201ENST00000383914 107 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 RNU6-804P-201ENST00000384286 107 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 Y_RNA.580-201ENST00000391004 95 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 RNA5SP338-201ENST00000410495 85 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 AC099513.1-201ENST00000490423 301 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 MIR4713-201ENST00000582691 75 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 AC097639.2-201ENST00000603159 172 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 SNORD3E-202ENST00000627253 216 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 MTND1P7-201ENST00000632801 297 ntBASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.17□□□□□ -2.06
SMC1BQ8NDV3 MIR424-201ENST00000362227 98 ntBASIC2.16□□□□□ -2.06
SMC1BQ8NDV3 Y_RNA.91-201ENST00000363042 107 ntBASIC2.16□□□□□ -2.06
SMC1BQ8NDV3 MIR660-201ENST00000385235 97 ntBASIC2.16□□□□□ -2.06
SMC1BQ8NDV3 RPS29P11-201ENST00000496507 171 ntBASIC2.16□□□□□ -2.06
SMC1BQ8NDV3 SNORD116-25-201ENST00000516517 92 ntBASIC2.16□□□□□ -2.06
SMC1BQ8NDV3 RNU6-1116P-201ENST00000517269 99 ntBASIC2.16□□□□□ -2.06
SMC1BQ8NDV3 AC022254.1-201ENST00000567857 235 ntBASIC2.16□□□□□ -2.06
SMC1BQ8NDV3 PVT1_3.1-201ENST00000620853 95 ntBASIC2.16□□□□□ -2.06
SMC1BQ8NDV3 RNU6-1123P-201ENST00000362347 106 ntBASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 SNORD116-18-201ENST00000383961 92 ntBASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 SNORD38C-201ENST00000384381 69 ntBASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 RNU6-342P-201ENST00000384521 104 ntBASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 AL021397.1-201ENST00000451806 248 ntBASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 RNA5SP233-201ENST00000459153 113 ntBASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 RNU7-121P-201ENST00000516604 62 ntBASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 MIR3935-201ENST00000583472 104 ntBASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 AC021753.1-201ENST00000635724 168 ntBASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
SMC1BQ8NDV3 SNORD24-201ENST00000383884 75 ntBASIC2.14□□□□□ -2.07
SMC1BQ8NDV3 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
SMC1BQ8NDV3 SNRPGP13-201ENST00000442212 177 ntBASIC2.14□□□□□ -2.07
SMC1BQ8NDV3 DNAJC19P2-201ENST00000593340 302 ntBASIC2.14□□□□□ -2.07
SMC1BQ8NDV3 AC006441.5-201ENST00000612680 209 ntBASIC2.14□□□□□ -2.07
SMC1BQ8NDV3 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
SMC1BQ8NDV3 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.13□□□□□ -2.07
SMC1BQ8NDV3 Y_RNA.393-201ENST00000383936 102 ntBASIC2.13□□□□□ -2.07
SMC1BQ8NDV3 Y_RNA.398-201ENST00000383952 99 ntBASIC2.13□□□□□ -2.07
SMC1BQ8NDV3 MIR452-201ENST00000385020 85 ntBASIC2.13□□□□□ -2.07
SMC1BQ8NDV3 SNORD37.2-201ENST00000391075 66 ntBASIC2.13□□□□□ -2.07
SMC1BQ8NDV3 JTBP1-201ENST00000441314 247 ntBASIC2.13□□□□□ -2.07
SMC1BQ8NDV3 RNU6-255P-201ENST00000516957 105 ntBASIC2.13□□□□□ -2.07
SMC1BQ8NDV3 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.13□□□□□ -2.07
SMC1BQ8NDV3 SNORA7.1-201ENST00000363750 139 ntBASIC2.12□□□□□ -2.07
SMC1BQ8NDV3 RNU6-268P-201ENST00000364174 107 ntBASIC2.12□□□□□ -2.07
SMC1BQ8NDV3 SNORA25.7-201ENST00000364375 127 ntBASIC2.12□□□□□ -2.07
SMC1BQ8NDV3 MIR1267-201ENST00000408723 78 ntBASIC2.12□□□□□ -2.07
SMC1BQ8NDV3 POLR2J4-204ENST00000418424 324 ntBASIC2.12□□□□□ -2.07
SMC1BQ8NDV3 Y_RNA.666-201ENST00000516187 112 ntBASIC2.12□□□□□ -2.07
SMC1BQ8NDV3 AL627230.6-201ENST00000611129 280 ntBASIC2.12□□□□□ -2.07
SMC1BQ8NDV3 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.12□□□□□ -2.07
SMC1BQ8NDV3 Y_RNA.66-201ENST00000362862 102 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 RNU6-199P-201ENST00000362954 107 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 Y_RNA.170-201ENST00000363746 110 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 RNA5SP160-201ENST00000364866 120 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 RNU6-1130P-201ENST00000365434 107 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 RNU6-597P-201ENST00000365620 102 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 MIR548M-201ENST00000408260 86 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 MIR548O-201ENST00000408583 114 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 RNU6-693P-201ENST00000516134 107 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 RNU6-1270P-201ENST00000517128 108 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 MIR4778-201ENST00000577635 80 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 MIR3646-201ENST00000578301 84 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 MIR8074-201ENST00000615081 81 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 MIR6844-201ENST00000637122 62 ntBASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
SMC1BQ8NDV3 ICE2P2-201ENST00000483823 2787 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 RNU6-888P-201ENST00000363010 101 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 RNU6-151P-201ENST00000364158 107 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 RNU6-203P-201ENST00000384038 104 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 RNU6-439P-201ENST00000384188 106 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 SNORD61-201ENST00000384252 73 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 AL603908.1-201ENST00000406098 201 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 SNRPGP14-201ENST00000435400 219 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 AC093850.1-201ENST00000454121 251 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 SNORD53B-201ENST00000577887 78 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 AC012493.3-201ENST00000604494 112 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 Y_RNA.778-201ENST00000620203 90 ntBASIC2.1□□□□□ -2.07
SMC1BQ8NDV3 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
SMC1BQ8NDV3 RNU6-978P-201ENST00000364371 103 ntBASIC2.09□□□□□ -2.07
SMC1BQ8NDV3 Y_RNA.354-201ENST00000365448 111 ntBASIC2.09□□□□□ -2.07
SMC1BQ8NDV3 RNU6-768P-201ENST00000384683 107 ntBASIC2.09□□□□□ -2.07
SMC1BQ8NDV3 SUMO2P12-201ENST00000405924 140 ntBASIC2.09□□□□□ -2.07
SMC1BQ8NDV3 AC015922.2-201ENST00000435593 184 ntBASIC2.09□□□□□ -2.07
SMC1BQ8NDV3 RN7SL274P-201ENST00000492268 272 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms