Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNU6ATAC41P-201ENST00000408600 126 ntBASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 AL161788.1-201ENST00000441805 169 ntBASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 RNU7-94P-201ENST00000459576 63 ntBASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 AL163195.1-201ENST00000496941 348 ntBASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 RNU6-807P-201ENST00000516805 107 ntBASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 FAM106DP-201ENST00000586416 501 ntBASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 AC002546.1-201ENST00000588041 2504 ntBASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
NPAS3Q8IXF0 SNORA25.9-201ENST00000365087 128 ntBASIC3.21□□□□□ -1.9
NPAS3Q8IXF0 Y_RNA.332-201ENST00000365271 113 ntBASIC3.21□□□□□ -1.9
NPAS3Q8IXF0 RNU6-1321P-201ENST00000390905 107 ntBASIC3.21□□□□□ -1.9
NPAS3Q8IXF0 HSPE1P26-201ENST00000405341 275 ntBASIC3.21□□□□□ -1.9
NPAS3Q8IXF0 EEF1A1P41-201ENST00000414667 207 ntBASIC3.21□□□□□ -1.9
NPAS3Q8IXF0 AC245047.7-201ENST00000440265 293 ntBASIC3.21□□□□□ -1.9
NPAS3Q8IXF0 RNA5SP356-201ENST00000515972 94 ntBASIC3.21□□□□□ -1.9
NPAS3Q8IXF0 XIST_intron.1-201ENST00000619444 68 ntBASIC3.21□□□□□ -1.9
NPAS3Q8IXF0 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NPAS3Q8IXF0 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
NPAS3Q8IXF0 MIR22-201ENST00000362190 85 ntBASIC3.2□□□□□ -1.9
NPAS3Q8IXF0 AC002076.2-201ENST00000617362 122 ntBASIC3.2□□□□□ -1.9
NPAS3Q8IXF0 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
NPAS3Q8IXF0 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.2□□□□□ -1.9
NPAS3Q8IXF0 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 SNORD115-31-201ENST00000365318 82 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 SNORD38.2-201ENST00000384470 69 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 MIR154-201ENST00000385243 84 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 RNA5SP482-201ENST00000391269 118 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 AC022018.1-201ENST00000430685 241 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 AC015922.2-201ENST00000435593 184 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 RN7SL442P-201ENST00000473804 320 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 SNORA31.1-201ENST00000515993 133 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 SNORA31.5-201ENST00000516190 133 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 DNAJC19P9-201ENST00000555084 351 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 GTF3AP2-201ENST00000557014 266 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 AC010733.2-201ENST00000589496 5702 ntBASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
NPAS3Q8IXF0 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 RNU5F-1-201ENST00000362507 117 ntBASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 RNU6-614P-201ENST00000384369 107 ntBASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 RNA5SP261-201ENST00000410536 106 ntBASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 RNU2-63P-201ENST00000410792 194 ntBASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 RNU6-1086P-201ENST00000410930 100 ntBASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 RNU7-53P-201ENST00000516705 60 ntBASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 U6.59-201ENST00000615686 107 ntBASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 NEAT1_2.1-201ENST00000620525 105 ntBASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 SNORD3E-202ENST00000627253 216 ntBASIC3.18□□□□□ -1.9
NPAS3Q8IXF0 SNORA31-201ENST00000362607 130 ntBASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 RNU6-1241P-201ENST00000384536 107 ntBASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 RNU6-913P-201ENST00000390913 95 ntBASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 HMGN1P33-201ENST00000432945 451 ntBASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 AL606517.2-201ENST00000442855 241 ntBASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 RNU7-156P-201ENST00000517214 74 ntBASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 AC104027.1-201ENST00000521887 300 ntBASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 AF117829.1-206ENST00000621883 3802 ntBASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NPAS3Q8IXF0 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 MIR449A-201ENST00000362113 91 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 Y_RNA.370-201ENST00000365589 108 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 MIR767-201ENST00000390228 109 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 RNA5SP252-201ENST00000391131 119 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 AC245047.3-201ENST00000429428 127 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 STAG3L5P-204ENST00000443759 179 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 RNU7-85P-201ENST00000458851 63 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 RN7SL429P-201ENST00000479090 223 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 RN7SL489P-201ENST00000486185 223 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 RN7SL327P-201ENST00000488659 223 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 RNU1-61P-201ENST00000516107 151 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 SNORA64.4-201ENST00000516632 81 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 MIR3162-201ENST00000581818 82 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 AC005520.4-201ENST00000604337 90 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 RN7SL853P-201ENST00000617250 223 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 AC073476.4-201ENST00000628409 72 ntBASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.16□□□□□ -1.9
NPAS3Q8IXF0 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
NPAS3Q8IXF0 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
NPAS3Q8IXF0 RNA5SP383-201ENST00000362934 120 ntBASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 RNA5SP133-201ENST00000363368 119 ntBASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 RNU6-805P-201ENST00000365643 106 ntBASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 SNORA70.7-201ENST00000384159 133 ntBASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 RNA5SP292-201ENST00000390974 118 ntBASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 FGF7P7-201ENST00000514120 227 ntBASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 Y_RNA.660-201ENST00000516002 120 ntBASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 RNU7-35P-201ENST00000517174 62 ntBASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 AL161722.3-201ENST00000605789 2983 ntBASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
NPAS3Q8IXF0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms