Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MIR758-201ENST00000390227 88 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 SNRPGP14-201ENST00000435400 219 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 SNORD77.4-201ENST00000516158 81 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 RNY3P16-201ENST00000516338 101 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 RNU6-111P-201ENST00000517179 105 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 AC011921.3-201ENST00000605540 361 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 Y_RNA.191-201ENST00000363972 113 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 Y_RNA.308-201ENST00000365043 101 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 RNU6-1138P-201ENST00000365359 106 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 RNU4-17P-201ENST00000365598 141 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 SNORD26-201ENST00000384147 75 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 Y_RNA.508-201ENST00000384502 114 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 RPL39P39-201ENST00000455840 151 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 COX6CP14-201ENST00000469580 174 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 SCARNA8-201ENST00000515924 131 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 SNORD111.1-201ENST00000516421 86 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 RNU6-453P-201ENST00000516819 85 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 RNU6-165P-201ENST00000517170 99 ntBASIC1.33□□□□□ -2.2
USP41Q3LFD5 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.33□□□□□ -2.2
USP41Q3LFD5 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.33□□□□□ -2.2
USP41Q3LFD5 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.33□□□□□ -2.2
USP41Q3LFD5 RNY4P28-201ENST00000365281 93 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 Y_RNA.355-201ENST00000365462 98 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 Y_RNA.401-201ENST00000383965 117 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 Y_RNA.486-201ENST00000384398 107 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 MIR616-201ENST00000385293 97 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 AL606845.1-201ENST00000404881 255 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 Y_RNA.622-201ENST00000411091 108 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 Y_RNA.626-201ENST00000411288 95 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 SNORD123-201ENST00000459473 70 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 RN7SKP164-201ENST00000516138 266 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 SNORA74.3-201ENST00000517108 154 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 MIR4662B-201ENST00000579498 81 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 MIR4452-201ENST00000583004 71 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 AC006441.5-201ENST00000612680 209 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 MIR8065-201ENST00000620577 100 ntBASIC1.32□□□□□ -2.2
USP41Q3LFD5 Y_RNA.199-201ENST00000364014 102 ntBASIC1.31□□□□□ -2.2
USP41Q3LFD5 RNU6-381P-201ENST00000391259 108 ntBASIC1.31□□□□□ -2.2
USP41Q3LFD5 RNU6-493P-201ENST00000391321 108 ntBASIC1.31□□□□□ -2.2
USP41Q3LFD5 RPS29P29-201ENST00000456396 171 ntBASIC1.31□□□□□ -2.2
USP41Q3LFD5 Y_RNA.666-201ENST00000516187 112 ntBASIC1.31□□□□□ -2.2
USP41Q3LFD5 RNU4-71P-201ENST00000516258 113 ntBASIC1.31□□□□□ -2.2
USP41Q3LFD5 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.31□□□□□ -2.2
USP41Q3LFD5 Y_RNA.188-201ENST00000363952 111 ntBASIC1.3□□□□□ -2.2
USP41Q3LFD5 RNU6-923P-201ENST00000364753 107 ntBASIC1.3□□□□□ -2.2
USP41Q3LFD5 Y_RNA.489-201ENST00000384410 101 ntBASIC1.3□□□□□ -2.2
USP41Q3LFD5 MIR520C-201ENST00000385005 87 ntBASIC1.3□□□□□ -2.2
USP41Q3LFD5 SNORD58.1-201ENST00000391313 66 ntBASIC1.3□□□□□ -2.2
USP41Q3LFD5 Y_RNA.618-201ENST00000410949 107 ntBASIC1.3□□□□□ -2.2
USP41Q3LFD5 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.3□□□□□ -2.2
USP41Q3LFD5 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.3□□□□□ -2.2
USP41Q3LFD5 RNU6-1299P-201ENST00000516316 100 ntBASIC1.3□□□□□ -2.2
USP41Q3LFD5 RNU7-25P-201ENST00000516544 62 ntBASIC1.3□□□□□ -2.2
USP41Q3LFD5 RNU6-1271P-201ENST00000517049 105 ntBASIC1.3□□□□□ -2.2
USP41Q3LFD5 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
USP41Q3LFD5 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.29□□□□□ -2.2
USP41Q3LFD5 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.29□□□□□ -2.2
USP41Q3LFD5 RNU6-830P-201ENST00000516353 107 ntBASIC1.29□□□□□ -2.2
USP41Q3LFD5 AL096861.1-201ENST00000610899 123 ntBASIC1.29□□□□□ -2.2
USP41Q3LFD5 AL391903.3-201ENST00000612158 163 ntBASIC1.29□□□□□ -2.2
USP41Q3LFD5 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
USP41Q3LFD5 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
USP41Q3LFD5 MIR26B-201ENST00000362251 77 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 SNORD114-22-201ENST00000365423 72 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 RNY3P5-201ENST00000384127 102 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 Y_RNA.547-201ENST00000384654 119 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 RNU6-1228P-201ENST00000391014 107 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 U8.17-201ENST00000391292 132 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 MIR548O-201ENST00000408583 114 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 RNU2-70P-201ENST00000410718 179 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.28□□□□□ -2.2
USP41Q3LFD5 SNRPGP8-201ENST00000454064 226 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 RNU7-181P-201ENST00000517234 74 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 MIR4764-201ENST00000580680 88 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 MIR7111-201ENST00000619751 72 ntBASIC1.28□□□□□ -2.2
USP41Q3LFD5 RNA5SP327-201ENST00000362494 101 ntBASIC1.27□□□□□ -2.21
USP41Q3LFD5 Y_RNA.432-201ENST00000384087 111 ntBASIC1.27□□□□□ -2.21
USP41Q3LFD5 SNORD28B-201ENST00000390993 75 ntBASIC1.27□□□□□ -2.21
USP41Q3LFD5 AC048334.1-201ENST00000477975 159 ntBASIC1.27□□□□□ -2.21
USP41Q3LFD5 SNORA31.2-201ENST00000516019 134 ntBASIC1.27□□□□□ -2.21
USP41Q3LFD5 RNU7-43P-201ENST00000516554 64 ntBASIC1.27□□□□□ -2.21
USP41Q3LFD5 RNU6-126P-201ENST00000516685 103 ntBASIC1.27□□□□□ -2.21
USP41Q3LFD5 RNU6-365P-201ENST00000517113 106 ntBASIC1.27□□□□□ -2.21
USP41Q3LFD5 MIR548AR-201ENST00000582191 57 ntBASIC1.27□□□□□ -2.21
USP41Q3LFD5 RNU2-4P-201ENST00000606190 192 ntBASIC1.27□□□□□ -2.21
USP41Q3LFD5 AL442644.1-201ENST00000454390 3105 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 MIR96-201ENST00000362288 78 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 Y_RNA.91-201ENST00000363042 107 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 Y_RNA.118-201ENST00000363300 101 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 RNU6-103P-201ENST00000363686 107 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 MIR570-201ENST00000384917 97 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 RNU2-55P-201ENST00000411146 174 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 RNU7-41P-201ENST00000515917 61 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 RNU6-693P-201ENST00000516134 107 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 RNU6-561P-201ENST00000516222 102 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 RNU6-1270P-201ENST00000517128 108 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 MIR3192-201ENST00000584920 77 ntBASIC1.26□□□□□ -2.21
USP41Q3LFD5 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms