Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RNU6-1228P-201ENST00000391014 107 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.28□□□□□ -2.2
HNF4AP41235 Y_RNA.622-201ENST00000411091 108 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 SNRPGP14-201ENST00000435400 219 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 AC009474.2-201ENST00000451383 136 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 CYCTP-201ENST00000504253 315 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 RNU6-1219P-201ENST00000516143 112 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 RNA5SP458-201ENST00000516188 119 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 Y_RNA.700-201ENST00000516806 100 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 Y_RNA.714-201ENST00000517065 90 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 AP002392.1-201ENST00000537692 208 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 MIR4421-201ENST00000578133 69 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 AC108706.1-201ENST00000611053 297 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 AC027279.3-201ENST00000625055 122 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 U6.106-201ENST00000636360 105 ntBASIC1.28□□□□□ -2.2
HNF4AP41235 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
HNF4AP41235 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
HNF4AP41235 Y_RNA.121-201ENST00000363309 113 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 RNU6-103P-201ENST00000363686 107 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 Y_RNA.182-201ENST00000363880 111 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 Y_RNA.233-201ENST00000364407 101 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 snoU2-30.1-201ENST00000365012 70 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 RNU6-1138P-201ENST00000365359 106 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 Y_RNA.412-201ENST00000384001 104 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 RNU6-484P-201ENST00000384016 107 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 RNY3P5-201ENST00000384127 102 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 SNORA70.7-201ENST00000384159 133 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 RNU4-70P-201ENST00000384579 139 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 MIR891A-201ENST00000401237 79 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 RNU2-64P-201ENST00000411315 191 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 AC023449.1-201ENST00000454464 154 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 RNU1-123P-201ENST00000458950 160 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 Y_RNA.797-201ENST00000515977 94 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 AC109810.1-201ENST00000534066 224 ntBASIC1.27□□□□□ -2.21
HNF4AP41235 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
HNF4AP41235 SNORA7.1-201ENST00000363750 139 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 SNORD45.3-201ENST00000363836 72 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 RNU6-682P-201ENST00000363843 106 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 AP1B1P2-201ENST00000416196 106 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 AC015922.2-201ENST00000435593 184 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 RNU7-120P-201ENST00000459334 63 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 RNU6-861P-201ENST00000516745 106 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 MIR3668-201ENST00000582138 75 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 AC087685.1-201ENST00000587507 141 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 AC072026.1-201ENST00000605023 201 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 AC106754.2-201ENST00000623006 233 ntBASIC1.26□□□□□ -2.21
HNF4AP41235 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
HNF4AP41235 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
HNF4AP41235 Y_RNA.75-201ENST00000362927 97 ntBASIC1.25□□□□□ -2.21
HNF4AP41235 SNORD14E-201ENST00000364009 85 ntBASIC1.25□□□□□ -2.21
HNF4AP41235 RNU6-268P-201ENST00000364174 107 ntBASIC1.25□□□□□ -2.21
HNF4AP41235 SNORA25-201ENST00000384384 134 ntBASIC1.25□□□□□ -2.21
HNF4AP41235 RNU2-55P-201ENST00000411146 174 ntBASIC1.25□□□□□ -2.21
HNF4AP41235 AC092991.1-201ENST00000477176 376 ntBASIC1.25□□□□□ -2.21
HNF4AP41235 RNU6-182P-201ENST00000516970 105 ntBASIC1.25□□□□□ -2.21
HNF4AP41235 AC068338.1-201ENST00000565567 176 ntBASIC1.25□□□□□ -2.21
HNF4AP41235 AL157834.3-201ENST00000615543 103 ntBASIC1.25□□□□□ -2.21
HNF4AP41235 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
HNF4AP41235 Y_RNA.91-201ENST00000363042 107 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 RNU6-275P-201ENST00000364910 107 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 Y_RNA.336-201ENST00000365307 109 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 RNU6-728P-201ENST00000365375 104 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 RNU6-442P-201ENST00000383968 104 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 MIR526A1-201ENST00000384897 85 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
HNF4AP41235 AL121914.1-201ENST00000450188 156 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 AC004223.1-201ENST00000479840 271 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 AC074198.2-201ENST00000508153 258 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 Y_RNA.666-201ENST00000516187 112 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 RNU6-1299P-201ENST00000516316 100 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 RNA5SP404-201ENST00000517118 132 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 AL513534.2-201ENST00000603836 250 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 AC006441.5-201ENST00000612680 209 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.24□□□□□ -2.21
HNF4AP41235 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
HNF4AP41235 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.24□□□□□ -2.21
HNF4AP41235 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.23□□□□□ -2.21
HNF4AP41235 RNU6-199P-201ENST00000362954 107 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 Y_RNA.634-201ENST00000364811 113 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 MIR15B-201ENST00000385045 98 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 MT-TR-201ENST00000387439 65 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 RNU6-917P-201ENST00000516294 104 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 RNU6-165P-201ENST00000517170 99 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 AC090142.3-201ENST00000519012 385 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 MRPS18CP4-201ENST00000535821 231 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 MIR3660-201ENST00000584845 100 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 AL022345.2-201ENST00000606307 135 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 AC027335.2-201ENST00000624030 375 ntBASIC1.23□□□□□ -2.21
HNF4AP41235 RNA5SP432-201ENST00000362480 116 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 Y_RNA.150-201ENST00000363562 102 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 Y_RNA.240-201ENST00000364469 95 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 Y_RNA.432-201ENST00000384087 111 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 MIR222-201ENST00000384992 110 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 MIR516B2-201ENST00000385190 85 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 SNORA40.6-201ENST00000391153 128 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 RNU4-43P-201ENST00000410628 137 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 HMGN2P32-201ENST00000444648 269 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.22□□□□□ -2.21
HNF4AP41235 RNU6-237P-201ENST00000515985 71 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms