Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Y_RNA.626-201ENST00000411288 95 ntBASIC1.13□□□□□ -2.23
SOX3P41225 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.13□□□□□ -2.23
SOX3P41225 RN7SKP179-201ENST00000516126 217 ntBASIC1.13□□□□□ -2.23
SOX3P41225 RNU7-149P-201ENST00000516739 59 ntBASIC1.13□□□□□ -2.23
SOX3P41225 SNORA74.3-201ENST00000517108 154 ntBASIC1.13□□□□□ -2.23
SOX3P41225 MIR4308-201ENST00000580634 81 ntBASIC1.13□□□□□ -2.23
SOX3P41225 AL049861.1-201ENST00000603130 150 ntBASIC1.13□□□□□ -2.23
SOX3P41225 MIR8065-201ENST00000620577 100 ntBASIC1.13□□□□□ -2.23
SOX3P41225 Y_RNA.229-201ENST00000364347 113 ntBASIC1.12□□□□□ -2.23
SOX3P41225 Y_RNA.274-201ENST00000364714 101 ntBASIC1.12□□□□□ -2.23
SOX3P41225 RNU6-53P-201ENST00000365367 106 ntBASIC1.12□□□□□ -2.23
SOX3P41225 SNORD26-201ENST00000384147 75 ntBASIC1.12□□□□□ -2.23
SOX3P41225 Y_RNA.478-201ENST00000384358 107 ntBASIC1.12□□□□□ -2.23
SOX3P41225 MIR15B-201ENST00000385045 98 ntBASIC1.12□□□□□ -2.23
SOX3P41225 MIR802-201ENST00000390235 94 ntBASIC1.12□□□□□ -2.23
SOX3P41225 RNU6-381P-201ENST00000391259 108 ntBASIC1.12□□□□□ -2.23
SOX3P41225 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.12□□□□□ -2.23
SOX3P41225 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.12□□□□□ -2.23
SOX3P41225 SNORD77.4-201ENST00000516158 81 ntBASIC1.12□□□□□ -2.23
SOX3P41225 RNU6-561P-201ENST00000516222 102 ntBASIC1.12□□□□□ -2.23
SOX3P41225 Y_RNA.676-201ENST00000516393 96 ntBASIC1.12□□□□□ -2.23
SOX3P41225 AC009779.6-201ENST00000603972 165 ntBASIC1.12□□□□□ -2.23
SOX3P41225 AC091895.1-201ENST00000624494 256 ntBASIC1.12□□□□□ -2.23
SOX3P41225 RNU6-923P-201ENST00000364753 107 ntBASIC1.11□□□□□ -2.23
SOX3P41225 Y_RNA.308-201ENST00000365043 101 ntBASIC1.11□□□□□ -2.23
SOX3P41225 RNU6-47P-201ENST00000383866 107 ntBASIC1.11□□□□□ -2.23
SOX3P41225 Y_RNA.401-201ENST00000383965 117 ntBASIC1.11□□□□□ -2.23
SOX3P41225 Y_RNA.587-201ENST00000391210 103 ntBASIC1.11□□□□□ -2.23
SOX3P41225 MIR1285-1-201ENST00000408593 84 ntBASIC1.11□□□□□ -2.23
SOX3P41225 RNU6-1054P-201ENST00000411293 104 ntBASIC1.11□□□□□ -2.23
SOX3P41225 COX6CP14-201ENST00000469580 174 ntBASIC1.11□□□□□ -2.23
SOX3P41225 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
SOX3P41225 Pinc.1-201ENST00000616452 154 ntBASIC1.11□□□□□ -2.23
SOX3P41225 RNU6-493P-201ENST00000391321 108 ntBASIC1.1□□□□□ -2.23
SOX3P41225 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.1□□□□□ -2.23
SOX3P41225 SNORA18.7-201ENST00000516910 131 ntBASIC1.1□□□□□ -2.23
SOX3P41225 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.1□□□□□ -2.23
SOX3P41225 MIR4662B-201ENST00000579498 81 ntBASIC1.1□□□□□ -2.23
SOX3P41225 AP000942.4-201ENST00000604811 241 ntBASIC1.1□□□□□ -2.23
SOX3P41225 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.1□□□□□ -2.23
SOX3P41225 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.1□□□□□ -2.23
SOX3P41225 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
SOX3P41225 Y_RNA.262-201ENST00000364641 102 ntBASIC1.09□□□□□ -2.23
SOX3P41225 RNY3P5-201ENST00000384127 102 ntBASIC1.09□□□□□ -2.23
SOX3P41225 RNU2-55P-201ENST00000411146 174 ntBASIC1.09□□□□□ -2.23
SOX3P41225 RPL39P39-201ENST00000455840 151 ntBASIC1.09□□□□□ -2.23
SOX3P41225 SNORD123-201ENST00000459473 70 ntBASIC1.09□□□□□ -2.23
SOX3P41225 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.09□□□□□ -2.23
SOX3P41225 RN7SKP164-201ENST00000516138 266 ntBASIC1.09□□□□□ -2.23
SOX3P41225 RNU4-71P-201ENST00000516258 113 ntBASIC1.09□□□□□ -2.23
SOX3P41225 RNU6-947P-201ENST00000516264 106 ntBASIC1.09□□□□□ -2.23
SOX3P41225 RNU6-126P-201ENST00000516685 103 ntBASIC1.09□□□□□ -2.23
SOX3P41225 AC022559.1-201ENST00000520905 205 ntBASIC1.09□□□□□ -2.23
SOX3P41225 AL096861.1-201ENST00000610899 123 ntBASIC1.09□□□□□ -2.23
SOX3P41225 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
SOX3P41225 RNU6-484P-201ENST00000384016 107 ntBASIC1.08□□□□□ -2.24
SOX3P41225 Y_RNA.486-201ENST00000384398 107 ntBASIC1.08□□□□□ -2.24
SOX3P41225 MIR520C-201ENST00000385005 87 ntBASIC1.08□□□□□ -2.24
SOX3P41225 MIR616-201ENST00000385293 97 ntBASIC1.08□□□□□ -2.24
SOX3P41225 RNU6-918P-201ENST00000391219 106 ntBASIC1.08□□□□□ -2.24
SOX3P41225 Y_RNA.618-201ENST00000410949 107 ntBASIC1.08□□□□□ -2.24
SOX3P41225 SNRPGP8-201ENST00000454064 226 ntBASIC1.08□□□□□ -2.24
SOX3P41225 snoU13.25-201ENST00000458945 104 ntBASIC1.08□□□□□ -2.24
SOX3P41225 AL133373.1-201ENST00000497098 94 ntBASIC1.08□□□□□ -2.24
SOX3P41225 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.08□□□□□ -2.24
SOX3P41225 RNU7-43P-201ENST00000516554 64 ntBASIC1.08□□□□□ -2.24
SOX3P41225 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SOX3P41225 MIR4764-201ENST00000580680 88 ntBASIC1.08□□□□□ -2.24
SOX3P41225 MIR3192-201ENST00000584920 77 ntBASIC1.08□□□□□ -2.24
SOX3P41225 MIR411-201ENST00000362239 96 ntBASIC1.07□□□□□ -2.24
SOX3P41225 RNA5SP327-201ENST00000362494 101 ntBASIC1.07□□□□□ -2.24
SOX3P41225 Y_RNA.199-201ENST00000364014 102 ntBASIC1.07□□□□□ -2.24
SOX3P41225 SNORA25.8-201ENST00000364831 128 ntBASIC1.07□□□□□ -2.24
SOX3P41225 Y_RNA.489-201ENST00000384410 101 ntBASIC1.07□□□□□ -2.24
SOX3P41225 RNU6-1228P-201ENST00000391014 107 ntBASIC1.07□□□□□ -2.24
SOX3P41225 U8.17-201ENST00000391292 132 ntBASIC1.07□□□□□ -2.24
SOX3P41225 AL606845.1-201ENST00000404881 255 ntBASIC1.07□□□□□ -2.24
SOX3P41225 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.07□□□□□ -2.24
SOX3P41225 RNU6-138P-201ENST00000515952 107 ntBASIC1.07□□□□□ -2.24
SOX3P41225 SNORD111.1-201ENST00000516421 86 ntBASIC1.07□□□□□ -2.24
SOX3P41225 AC007751.1-201ENST00000529260 376 ntBASIC1.07□□□□□ -2.24
SOX3P41225 AC019288.1-201ENST00000557918 224 ntBASIC1.07□□□□□ -2.24
SOX3P41225 MIR548AR-201ENST00000582191 57 ntBASIC1.07□□□□□ -2.24
SOX3P41225 AL391903.3-201ENST00000612158 163 ntBASIC1.07□□□□□ -2.24
SOX3P41225 MIR8070-201ENST00000616510 88 ntBASIC1.07□□□□□ -2.24
SOX3P41225 AC141273.2-201ENST00000618989 130 ntBASIC1.07□□□□□ -2.24
SOX3P41225 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
SOX3P41225 Y_RNA.91-201ENST00000363042 107 ntBASIC1.06□□□□□ -2.24
SOX3P41225 Y_RNA.200-201ENST00000364018 102 ntBASIC1.06□□□□□ -2.24
SOX3P41225 RNU4-17P-201ENST00000365598 141 ntBASIC1.06□□□□□ -2.24
SOX3P41225 Y_RNA.476-201ENST00000384347 108 ntBASIC1.06□□□□□ -2.24
SOX3P41225 Y_RNA.547-201ENST00000384654 119 ntBASIC1.06□□□□□ -2.24
SOX3P41225 MIR548A2-201ENST00000384956 97 ntBASIC1.06□□□□□ -2.24
SOX3P41225 Y_RNA.622-201ENST00000411091 108 ntBASIC1.06□□□□□ -2.24
SOX3P41225 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.06□□□□□ -2.24
SOX3P41225 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.06□□□□□ -2.24
SOX3P41225 AC245047.7-201ENST00000440265 293 ntBASIC1.06□□□□□ -2.24
SOX3P41225 AC048334.1-201ENST00000477975 159 ntBASIC1.06□□□□□ -2.24
SOX3P41225 RNU4-57P-201ENST00000515980 135 ntBASIC1.06□□□□□ -2.24
SOX3P41225 Y_RNA.666-201ENST00000516187 112 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms