Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Y_RNA.313-201ENST00000365095 103 ntBASIC2.96□□□□□ -1.94
MSX1P28360 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
MSX1P28360 Y_RNA.430-201ENST00000384081 110 ntBASIC2.96□□□□□ -1.94
MSX1P28360 Y_RNA.437-201ENST00000384113 113 ntBASIC2.96□□□□□ -1.94
MSX1P28360 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
MSX1P28360 SNORA26.6-201ENST00000391256 115 ntBASIC2.96□□□□□ -1.94
MSX1P28360 RNU7-67P-201ENST00000459003 62 ntBASIC2.96□□□□□ -1.94
MSX1P28360 RNA5SP341-201ENST00000516261 117 ntBASIC2.96□□□□□ -1.94
MSX1P28360 RNA5SP168-201ENST00000516642 112 ntBASIC2.96□□□□□ -1.94
MSX1P28360 RNU6-958P-201ENST00000516995 106 ntBASIC2.96□□□□□ -1.94
MSX1P28360 DNAJC19P9-201ENST00000555084 351 ntBASIC2.96□□□□□ -1.94
MSX1P28360 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.96□□□□□ -1.94
MSX1P28360 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.96□□□□□ -1.94
MSX1P28360 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
MSX1P28360 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.95□□□□□ -1.94
MSX1P28360 AC092435.3-201ENST00000565538 3654 ntBASIC2.95□□□□□ -1.94
MSX1P28360 RNU6-1296P-201ENST00000383879 107 ntBASIC2.95□□□□□ -1.94
MSX1P28360 Y_RNA.426-201ENST00000384068 113 ntBASIC2.95□□□□□ -1.94
MSX1P28360 MIR452-201ENST00000385020 85 ntBASIC2.95□□□□□ -1.94
MSX1P28360 RNA5SP229-201ENST00000410809 99 ntBASIC2.95□□□□□ -1.94
MSX1P28360 RPL32P35-201ENST00000415214 394 ntBASIC2.95□□□□□ -1.94
MSX1P28360 HSPE1P9-201ENST00000440046 311 ntBASIC2.95□□□□□ -1.94
MSX1P28360 RPS29P29-201ENST00000456396 171 ntBASIC2.95□□□□□ -1.94
MSX1P28360 RNU7-34P-201ENST00000459394 64 ntBASIC2.95□□□□□ -1.94
MSX1P28360 AC108729.3-201ENST00000513484 108 ntBASIC2.95□□□□□ -1.94
MSX1P28360 RNU7-12P-201ENST00000516030 62 ntBASIC2.95□□□□□ -1.94
MSX1P28360 MIR6717-201ENST00000622747 73 ntBASIC2.95□□□□□ -1.94
MSX1P28360 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.95□□□□□ -1.94
MSX1P28360 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
MSX1P28360 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
MSX1P28360 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
MSX1P28360 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
MSX1P28360 RNU1-58P-201ENST00000362413 163 ntBASIC2.94□□□□□ -1.94
MSX1P28360 SNORD115-3-201ENST00000363100 82 ntBASIC2.94□□□□□ -1.94
MSX1P28360 SNORD58A-201ENST00000383875 65 ntBASIC2.94□□□□□ -1.94
MSX1P28360 SNORA24-201ENST00000384096 131 ntBASIC2.94□□□□□ -1.94
MSX1P28360 RNU6-950P-201ENST00000384651 107 ntBASIC2.94□□□□□ -1.94
MSX1P28360 RNU6-857P-201ENST00000515893 110 ntBASIC2.94□□□□□ -1.94
MSX1P28360 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.94□□□□□ -1.94
MSX1P28360 AL449363.1-201ENST00000617815 186 ntBASIC2.94□□□□□ -1.94
MSX1P28360 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
MSX1P28360 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.94□□□□□ -1.94
MSX1P28360 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.93□□□□□ -1.94
MSX1P28360 MIR422A-201ENST00000362286 90 ntBASIC2.93□□□□□ -1.94
MSX1P28360 RNA5SP383-201ENST00000362934 120 ntBASIC2.93□□□□□ -1.94
MSX1P28360 MIR516B2-201ENST00000385190 85 ntBASIC2.93□□□□□ -1.94
MSX1P28360 MIR136-201ENST00000385207 82 ntBASIC2.93□□□□□ -1.94
MSX1P28360 U8.15-201ENST00000390947 134 ntBASIC2.93□□□□□ -1.94
MSX1P28360 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.93□□□□□ -1.94
MSX1P28360 MIR2682-201ENST00000580305 110 ntBASIC2.93□□□□□ -1.94
MSX1P28360 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
MSX1P28360 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
MSX1P28360 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.93□□□□□ -1.94
MSX1P28360 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
MSX1P28360 SNORA32-201ENST00000384072 121 ntBASIC2.92□□□□□ -1.94
MSX1P28360 RNU6-24P-201ENST00000384440 107 ntBASIC2.92□□□□□ -1.94
MSX1P28360 MIR29C-201ENST00000385231 88 ntBASIC2.92□□□□□ -1.94
MSX1P28360 MIR887-201ENST00000401258 79 ntBASIC2.92□□□□□ -1.94
MSX1P28360 RNU7-73P-201ENST00000458743 63 ntBASIC2.92□□□□□ -1.94
MSX1P28360 RNA5SP217-201ENST00000515959 91 ntBASIC2.92□□□□□ -1.94
MSX1P28360 MIR5094-201ENST00000578766 85 ntBASIC2.92□□□□□ -1.94
MSX1P28360 MIR4791-201ENST00000607666 84 ntBASIC2.92□□□□□ -1.94
MSX1P28360 MIR376B-201ENST00000614515 100 ntBASIC2.92□□□□□ -1.94
MSX1P28360 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.92□□□□□ -1.94
MSX1P28360 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.92□□□□□ -1.94
MSX1P28360 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.91□□□□□ -1.94
MSX1P28360 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
MSX1P28360 AC009487.2-201ENST00000420969 6821 ntBASIC2.91□□□□□ -1.94
MSX1P28360 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
MSX1P28360 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.91□□□□□ -1.94
MSX1P28360 U8.9-201ENST00000365667 134 ntBASIC2.91□□□□□ -1.94
MSX1P28360 RNY1P4-201ENST00000384595 115 ntBASIC2.91□□□□□ -1.94
MSX1P28360 RNU6-1190P-201ENST00000410811 104 ntBASIC2.91□□□□□ -1.94
MSX1P28360 AC090844.1-201ENST00000422019 156 ntBASIC2.91□□□□□ -1.94
MSX1P28360 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.91□□□□□ -1.94
MSX1P28360 RNU6-65P-201ENST00000516332 98 ntBASIC2.91□□□□□ -1.94
MSX1P28360 SNORA64.4-201ENST00000516632 81 ntBASIC2.91□□□□□ -1.94
MSX1P28360 AC104027.1-201ENST00000521887 300 ntBASIC2.91□□□□□ -1.94
MSX1P28360 AL020996.3-201ENST00000606617 222 ntBASIC2.91□□□□□ -1.94
MSX1P28360 MIR622-201ENST00000638396 96 ntBASIC2.91□□□□□ -1.94
MSX1P28360 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
MSX1P28360 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.9□□□□□ -1.94
MSX1P28360 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.9□□□□□ -1.94
MSX1P28360 SNORA80A-201ENST00000363922 136 ntBASIC2.9□□□□□ -1.95
MSX1P28360 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.9□□□□□ -1.95
MSX1P28360 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
MSX1P28360 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.89□□□□□ -1.95
MSX1P28360 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
MSX1P28360 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
MSX1P28360 MIR148B-201ENST00000362252 99 ntBASIC2.89□□□□□ -1.95
MSX1P28360 RNU6-1031P-201ENST00000384773 107 ntBASIC2.89□□□□□ -1.95
MSX1P28360 RNU6-913P-201ENST00000390913 95 ntBASIC2.89□□□□□ -1.95
MSX1P28360 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.89□□□□□ -1.95
MSX1P28360 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.89□□□□□ -1.95
MSX1P28360 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.89□□□□□ -1.95
MSX1P28360 RN7SL863P-201ENST00000462370 296 ntBASIC2.89□□□□□ -1.95
MSX1P28360 RNU7-2P-201ENST00000516096 62 ntBASIC2.89□□□□□ -1.95
MSX1P28360 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.89□□□□□ -1.95
MSX1P28360 AC019288.1-201ENST00000557918 224 ntBASIC2.89□□□□□ -1.95
MSX1P28360 ELOCP29-201ENST00000588193 334 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 166.3 ms