Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
HOXD9P28356 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.82□□□□□ -2.12
HOXD9P28356 snoU2-30.1-201ENST00000365012 70 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 Y_RNA.336-201ENST00000365307 109 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 SNORD116-14-201ENST00000383894 92 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 SNORD116-17-201ENST00000383929 92 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 SNORA1-201ENST00000384107 130 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 SNORD116-15-201ENST00000384445 92 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 SNORD116-19-201ENST00000384729 92 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 AL627390.1-201ENST00000396055 340 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 MIR891A-201ENST00000401237 79 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 SUMO2P12-201ENST00000405924 140 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 RNA5SP489-201ENST00000410986 109 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 SNRPGP13-201ENST00000442212 177 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 SNORA18.4-201ENST00000516440 124 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 MIR3683-201ENST00000580847 82 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 AL096840.1-201ENST00000603287 93 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 MIR8081-201ENST00000611533 95 ntBASIC1.82□□□□□ -2.12
HOXD9P28356 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.82□□□□□ -2.12
HOXD9P28356 MIRLET7C-201ENST00000362160 84 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 RNU6-1084P-201ENST00000362498 107 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 U8.1-201ENST00000362843 134 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 RNA5SP205-201ENST00000364653 136 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 RNU6-442P-201ENST00000383968 104 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 RNU6-950P-201ENST00000384651 107 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 RN7SKP200-201ENST00000410564 320 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 RNU4-57P-201ENST00000515980 135 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 RNU6-693P-201ENST00000516134 107 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 SNORD45.4-201ENST00000516629 73 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 RNU2-60P-201ENST00000517290 128 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 MIR3121-201ENST00000579680 77 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 AC011603.4-201ENST00000611325 277 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 AL442644.1-201ENST00000454390 3105 ntBASIC1.81□□□□□ -2.12
HOXD9P28356 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
HOXD9P28356 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
HOXD9P28356 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.81□□□□□ -2.12
HOXD9P28356 SNORD14E-201ENST00000364009 85 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 RNU6-268P-201ENST00000364174 107 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 Y_RNA.280-201ENST00000364765 112 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 RNA5SP190-201ENST00000365222 118 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 MIR520A-201ENST00000384862 85 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 MIR518F-201ENST00000384973 87 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 AL603914.1-201ENST00000401964 204 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 SNORA25.15-201ENST00000516487 89 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 Y_RNA.692-201ENST00000516627 105 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 MIR4419B-201ENST00000577260 68 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 MIR4255-201ENST00000579351 72 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 MIR3129-201ENST00000581095 76 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.8□□□□□ -2.12
HOXD9P28356 AC027279.3-201ENST00000625055 122 ntBASIC1.8□□□□□ -2.12
HOXD9P28356 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
HOXD9P28356 Y_RNA.52-201ENST00000362760 96 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 RNU6-112P-201ENST00000363599 104 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 RNU6-296P-201ENST00000384608 107 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 SNORD77.3-201ENST00000391113 65 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXD9P28356 STAG3L5P-204ENST00000443759 179 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 HMGN2P32-201ENST00000444648 269 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 CYCTP-201ENST00000504253 315 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 RNU6-1333P-201ENST00000516162 93 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 Y_RNA.686-201ENST00000516548 134 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 RNU6-1234P-201ENST00000516877 103 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 RNU6-1270P-201ENST00000517128 108 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 Y_RNA.757-201ENST00000578934 114 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 MIR4713-201ENST00000582691 75 ntBASIC1.79□□□□□ -2.12
HOXD9P28356 Y_RNA.261-201ENST00000364631 102 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 SNORD18B-201ENST00000365659 72 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 Y_RNA.410-201ENST00000383992 113 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 Y_RNA.563-201ENST00000384707 108 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 MIR802-201ENST00000390235 94 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 AL034345.1-201ENST00000407768 123 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 RNA5SP100-201ENST00000410903 110 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 RNA5SP59-201ENST00000410922 110 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.78□□□□□ -2.12
HOXD9P28356 SNORD13-201ENST00000459299 104 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 RNU6-659P-201ENST00000516454 104 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.78□□□□□ -2.12
HOXD9P28356 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.78□□□□□ -2.12
HOXD9P28356 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.78□□□□□ -2.12
HOXD9P28356 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
HOXD9P28356 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
HOXD9P28356 RNU6-1290P-201ENST00000362957 109 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 RNU6-424P-201ENST00000384367 105 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 RNU6-1031P-201ENST00000384773 107 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 MIR548O-201ENST00000408583 114 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 Y_RNA.629-201ENST00000411368 105 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.77□□□□□ -2.13
HOXD9P28356 AF228730.3-201ENST00000436691 102 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 AL603825.1-201ENST00000438481 80 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 HSPE1P9-201ENST00000440046 311 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 AC114811.1-201ENST00000507207 168 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 RNA5SP236-201ENST00000516169 116 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 AC022254.1-201ENST00000567857 235 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 AC134878.1-201ENST00000619901 243 ntBASIC1.77□□□□□ -2.13
HOXD9P28356 RNU6-833P-201ENST00000363486 107 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 SNORD48-201ENST00000364953 64 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 SNORA4.2-201ENST00000365313 147 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 Y_RNA.547-201ENST00000384654 119 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 193.8 ms