Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AL031737.1-201ENST00000450125 223 ntBASIC2.09□□□□□ -2.07
TRIM38O00635 SNORD11-201ENST00000459124 84 ntBASIC2.09□□□□□ -2.07
TRIM38O00635 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.09□□□□□ -2.07
TRIM38O00635 RNA5SP153-201ENST00000516498 76 ntBASIC2.09□□□□□ -2.07
TRIM38O00635 RNU7-128P-201ENST00000517247 62 ntBASIC2.09□□□□□ -2.07
TRIM38O00635 AC084364.2-201ENST00000546924 395 ntBASIC2.09□□□□□ -2.07
TRIM38O00635 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.09□□□□□ -2.07
TRIM38O00635 AC025166.1-201ENST00000612411 163 ntBASIC2.09□□□□□ -2.07
TRIM38O00635 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
TRIM38O00635 MTND5P18-201ENST00000445624 1801 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 RNU1-22P-201ENST00000363334 158 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 SNORA33-201ENST00000363664 130 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 RNU6-905P-201ENST00000384434 107 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 U8.13-201ENST00000390842 128 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 RNU6-554P-201ENST00000410466 106 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 RNU2-70P-201ENST00000410718 179 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 AL445646.1-201ENST00000431784 216 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 RNU7-94P-201ENST00000459576 63 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 RPS29P24-201ENST00000486345 171 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 Y_RNA.677-201ENST00000516401 85 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 RNA5SP481-201ENST00000516814 122 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 AC007751.1-201ENST00000529260 376 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 RPL23AP91-201ENST00000569211 455 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 AL022345.2-201ENST00000606307 135 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 uc_338.4-201ENST00000616635 176 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 U6.108-201ENST00000637764 58 ntBASIC2.08□□□□□ -2.08
TRIM38O00635 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
TRIM38O00635 RNU6-640P-201ENST00000363693 105 ntBASIC2.07□□□□□ -2.08
TRIM38O00635 Y_RNA.796-201ENST00000364268 102 ntBASIC2.07□□□□□ -2.08
TRIM38O00635 RNA5SP160-201ENST00000364866 120 ntBASIC2.07□□□□□ -2.08
TRIM38O00635 Y_RNA.799-201ENST00000364992 102 ntBASIC2.07□□□□□ -2.08
TRIM38O00635 MIR891A-201ENST00000401237 79 ntBASIC2.07□□□□□ -2.08
TRIM38O00635 RPS4XP11-201ENST00000446897 772 ntBASIC2.07□□□□□ -2.08
TRIM38O00635 RNA5SP57-201ENST00000459463 123 ntBASIC2.07□□□□□ -2.08
TRIM38O00635 MRPS17P9-201ENST00000511924 393 ntBASIC2.07□□□□□ -2.08
TRIM38O00635 MIR514B-201ENST00000516774 80 ntBASIC2.07□□□□□ -2.08
TRIM38O00635 AL096840.1-201ENST00000603287 93 ntBASIC2.07□□□□□ -2.08
TRIM38O00635 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.07□□□□□ -2.08
TRIM38O00635 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
TRIM38O00635 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
TRIM38O00635 Y_RNA.66-201ENST00000362862 102 ntBASIC2.06□□□□□ -2.08
TRIM38O00635 Y_RNA.203-201ENST00000364106 102 ntBASIC2.06□□□□□ -2.08
TRIM38O00635 SNORD73B-201ENST00000364394 72 ntBASIC2.06□□□□□ -2.08
TRIM38O00635 Y_RNA.346-201ENST00000365385 112 ntBASIC2.06□□□□□ -2.08
TRIM38O00635 Y_RNA.348-201ENST00000365403 103 ntBASIC2.06□□□□□ -2.08
TRIM38O00635 SNORD18B-201ENST00000365659 72 ntBASIC2.06□□□□□ -2.08
TRIM38O00635 MIR562-201ENST00000384894 95 ntBASIC2.06□□□□□ -2.08
TRIM38O00635 RNU6-295P-201ENST00000516901 104 ntBASIC2.06□□□□□ -2.08
TRIM38O00635 RNU6-537P-201ENST00000517277 103 ntBASIC2.06□□□□□ -2.08
TRIM38O00635 AL359851.1-201ENST00000569460 4997 ntBASIC2.06□□□□□ -2.08
TRIM38O00635 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.05□□□□□ -2.08
TRIM38O00635 RNU6-1209P-201ENST00000363655 107 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 RNU4-13P-201ENST00000364019 141 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 SNORA1-201ENST00000384107 130 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 Y_RNA.486-201ENST00000384398 107 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 MIR624-201ENST00000385217 97 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 MIR1302-4-201ENST00000408701 150 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 RNU6-1186P-201ENST00000410429 97 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 AL163195.1-201ENST00000496941 348 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 RNA5SP236-201ENST00000516169 116 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 RNU7-149P-201ENST00000516739 59 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 SNORA31.17-201ENST00000516953 127 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 RNU7-172P-201ENST00000517125 64 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 MIR4448-201ENST00000584360 86 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 AC002984.1-201ENST00000591692 448 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 AL365205.2-201ENST00000594586 68 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 AC106754.2-201ENST00000623006 233 ntBASIC2.05□□□□□ -2.08
TRIM38O00635 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
TRIM38O00635 RNU6-661P-201ENST00000362409 107 ntBASIC2.04□□□□□ -2.08
TRIM38O00635 Y_RNA.281-201ENST00000364774 94 ntBASIC2.04□□□□□ -2.08
TRIM38O00635 RNU6-950P-201ENST00000384651 107 ntBASIC2.04□□□□□ -2.08
TRIM38O00635 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
TRIM38O00635 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
TRIM38O00635 MIR1263-201ENST00000408324 86 ntBASIC2.04□□□□□ -2.08
TRIM38O00635 RNA5SP127-201ENST00000411051 133 ntBASIC2.04□□□□□ -2.08
TRIM38O00635 CALM2P4-201ENST00000430810 426 ntBASIC2.04□□□□□ -2.08
TRIM38O00635 SNORA18.4-201ENST00000516440 124 ntBASIC2.04□□□□□ -2.08
TRIM38O00635 Pinc.1-201ENST00000616452 154 ntBASIC2.04□□□□□ -2.08
TRIM38O00635 RNU6-1107P-201ENST00000364817 104 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 U8.6-201ENST00000364939 135 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 RNU6-1138P-201ENST00000365359 106 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 Y_RNA.549-201ENST00000384657 102 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 SNORA26.9-201ENST00000391322 122 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 RNU2-7P-201ENST00000410794 178 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.03□□□□□ -2.08
TRIM38O00635 FTH1P12-201ENST00000432137 551 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.03□□□□□ -2.08
TRIM38O00635 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.03□□□□□ -2.08
TRIM38O00635 RNA5SP364-201ENST00000516938 78 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 RNA5SP437-201ENST00000517249 129 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 MIR3935-201ENST00000583472 104 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 Y_RNA.783-201ENST00000613546 102 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 AC018630.2-201ENST00000534866 2403 ntBASIC2.03□□□□□ -2.08
TRIM38O00635 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.09
TRIM38O00635 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
TRIM38O00635 Y_RNA.388-201ENST00000383919 113 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 RNU6-49P-201ENST00000384256 107 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 SNORA51.10-201ENST00000384418 136 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 Y_RNA.528-201ENST00000384575 108 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 RNU2-40P-201ENST00000410833 196 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms