Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
USP3Q9Y6I4 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.02□□□□□ -1.93
USP3Q9Y6I4 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
USP3Q9Y6I4 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP3Q9Y6I4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.01□□□□□ -1.93
USP3Q9Y6I4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP3Q9Y6I4 RNU6-409P-201ENST00000384114 104 ntBASIC3.01□□□□□ -1.93
USP3Q9Y6I4 COTL1P1-201ENST00000422309 375 ntBASIC3.01□□□□□ -1.93
USP3Q9Y6I4 AC092427.1-202ENST00000430569 476 ntBASIC3.01□□□□□ -1.93
USP3Q9Y6I4 UBL5P3-201ENST00000475112 231 ntBASIC3.01□□□□□ -1.93
USP3Q9Y6I4 RNU7-53P-201ENST00000516705 60 ntBASIC3.01□□□□□ -1.93
USP3Q9Y6I4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC3.01□□□□□ -1.93
USP3Q9Y6I4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
USP3Q9Y6I4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.01□□□□□ -1.93
USP3Q9Y6I4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3□□□□□ -1.93
USP3Q9Y6I4 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3□□□□□ -1.93
USP3Q9Y6I4 Y_RNA.155-201ENST00000363632 101 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 RNY1P7-201ENST00000384743 110 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 RNU6-1319P-201ENST00000390855 104 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 RNU6-747P-201ENST00000390928 104 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 RNU6-241P-201ENST00000391148 104 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 RNU4-69P-201ENST00000410677 143 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 RNU6-733P-201ENST00000410759 104 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 RNU6-177P-201ENST00000411257 104 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3□□□□□ -1.93
USP3Q9Y6I4 AC104389.3-201ENST00000445629 235 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 RNU2-11P-201ENST00000459191 187 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 RNU6ATAC17P-201ENST00000516074 71 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 SNORA31.10-201ENST00000516482 106 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 AC026421.1-201ENST00000519101 163 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 MIR3126-201ENST00000577443 74 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 HSPE1P19-201ENST00000603327 295 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 AC006386.2-201ENST00000624491 75 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 AC012005.1-201ENST00000624575 75 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3□□□□□ -1.93
USP3Q9Y6I4 MIR203B-201ENST00000636080 86 ntBASIC3□□□□□ -1.93
USP3Q9Y6I4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
USP3Q9Y6I4 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
USP3Q9Y6I4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
USP3Q9Y6I4 SNORD115-2-201ENST00000362842 82 ntBASIC2.99□□□□□ -1.93
USP3Q9Y6I4 SNORD115-20-201ENST00000365099 82 ntBASIC2.99□□□□□ -1.93
USP3Q9Y6I4 SNORD77B-201ENST00000391112 67 ntBASIC2.99□□□□□ -1.93
USP3Q9Y6I4 POLR2J4-204ENST00000418424 324 ntBASIC2.99□□□□□ -1.93
USP3Q9Y6I4 RNA5SP367-201ENST00000516557 118 ntBASIC2.99□□□□□ -1.93
USP3Q9Y6I4 RNA5SP137-201ENST00000516833 135 ntBASIC2.99□□□□□ -1.93
USP3Q9Y6I4 RNU6-1116P-201ENST00000517269 99 ntBASIC2.99□□□□□ -1.93
USP3Q9Y6I4 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
USP3Q9Y6I4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
USP3Q9Y6I4 AC092881.1-201ENST00000638218 2733 ntBASIC2.99□□□□□ -1.93
USP3Q9Y6I4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
USP3Q9Y6I4 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.98□□□□□ -1.93
USP3Q9Y6I4 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
USP3Q9Y6I4 RNU4-67P-201ENST00000364569 141 ntBASIC2.98□□□□□ -1.93
USP3Q9Y6I4 RNU6-1134P-201ENST00000365156 101 ntBASIC2.98□□□□□ -1.93
USP3Q9Y6I4 AL512326.2-201ENST00000426359 151 ntBASIC2.98□□□□□ -1.93
USP3Q9Y6I4 AC007336.1-201ENST00000576365 3828 ntBASIC2.98□□□□□ -1.93
USP3Q9Y6I4 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
USP3Q9Y6I4 SNORD115-3-201ENST00000363100 82 ntBASIC2.97□□□□□ -1.93
USP3Q9Y6I4 RNU6-832P-201ENST00000363319 107 ntBASIC2.97□□□□□ -1.93
USP3Q9Y6I4 Y_RNA.360-201ENST00000365512 102 ntBASIC2.97□□□□□ -1.93
USP3Q9Y6I4 U8.16-201ENST00000391279 133 ntBASIC2.97□□□□□ -1.93
USP3Q9Y6I4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.97□□□□□ -1.93
USP3Q9Y6I4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.97□□□□□ -1.93
USP3Q9Y6I4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.97□□□□□ -1.93
USP3Q9Y6I4 PGBD4P5-201ENST00000445958 426 ntBASIC2.97□□□□□ -1.93
USP3Q9Y6I4 RNU7-113P-201ENST00000459273 62 ntBASIC2.97□□□□□ -1.93
USP3Q9Y6I4 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.97□□□□□ -1.93
USP3Q9Y6I4 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.97□□□□□ -1.93
USP3Q9Y6I4 AL590808.1-201ENST00000618696 141 ntBASIC2.97□□□□□ -1.93
USP3Q9Y6I4 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
USP3Q9Y6I4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
USP3Q9Y6I4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
USP3Q9Y6I4 ICE2P2-201ENST00000483823 2787 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP3Q9Y6I4 Y_RNA.377-201ENST00000365644 108 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 RNU6-1152P-201ENST00000384576 107 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 MIR512-1-201ENST00000384913 84 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 MIR136-201ENST00000385207 82 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 RNA5SP465-201ENST00000391195 109 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.96□□□□□ -1.94
USP3Q9Y6I4 AC004941.2-201ENST00000427009 228 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 RNU7-12P-201ENST00000516030 62 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 RNU6-1018P-201ENST00000516577 106 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 RNA5SP168-201ENST00000516642 112 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 AC079600.2-201ENST00000550076 130 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 DNAJC19P9-201ENST00000555084 351 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 MIR5094-201ENST00000578766 85 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 ELOCP29-201ENST00000588193 334 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 MIR7106-201ENST00000612419 65 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 AC064859.1-201ENST00000624741 174 ntBASIC2.96□□□□□ -1.94
USP3Q9Y6I4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
USP3Q9Y6I4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.96□□□□□ -1.94
USP3Q9Y6I4 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP3Q9Y6I4 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
USP3Q9Y6I4 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
USP3Q9Y6I4 AC108206.1-201ENST00000570186 4159 ntBASIC2.95□□□□□ -1.94
USP3Q9Y6I4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
USP3Q9Y6I4 RNA5SP173-201ENST00000364857 136 ntBASIC2.95□□□□□ -1.94
USP3Q9Y6I4 Y_RNA.370-201ENST00000365589 108 ntBASIC2.95□□□□□ -1.94
USP3Q9Y6I4 SNORA18-201ENST00000384416 132 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms