Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
ZC3H4Q9UPT8 VTRNA1-1-201ENST00000363120 99 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 SNORA46-201ENST00000384762 135 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 AC087499.4-201ENST00000448505 178 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 RNA5SP217-201ENST00000515959 91 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 Y_RNA.241-201ENST00000364470 117 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 SNORA11.4-201ENST00000408823 129 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 RPS3AP1-201ENST00000413190 320 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 AC108210.2-201ENST00000503681 201 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 AC114811.1-201ENST00000507207 168 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 RNU2-35P-201ENST00000516446 142 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 RNA5SP148-201ENST00000516527 94 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 RNU6-1116P-201ENST00000517269 99 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 AC007318.2-201ENST00000620999 243 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 AL162726.3-218ENST00000636401 95 ntBASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.44□□□□□ -1.86
ZC3H4Q9UPT8 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 AL021368.2-201ENST00000606125 5352 ntBASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 AC009487.2-201ENST00000420969 6821 ntBASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 SNORA25.6-201ENST00000364121 118 ntBASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 RNU7-28P-201ENST00000516759 62 ntBASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 AC015712.3-201ENST00000559380 164 ntBASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 SNORD115-40-201ENST00000606510 82 ntBASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 AL442128.1-201ENST00000615151 90 ntBASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 MIR2052-201ENST00000636055 55 ntBASIC3.43□□□□□ -1.86
ZC3H4Q9UPT8 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 RNU6-816P-201ENST00000390914 107 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 RNU6-1268P-201ENST00000391214 107 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 RNU6-1239P-201ENST00000391310 107 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 RN7SKP200-201ENST00000410564 320 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 RNA5SP247-201ENST00000411181 105 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 SUMO1P4-201ENST00000429430 302 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 MTATP8P2-201ENST00000435212 202 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 RN7SL20P-201ENST00000488827 297 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 RNA5SP385-201ENST00000515947 110 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 RNU6-904P-201ENST00000516206 101 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 RNU6ATAC12P-201ENST00000516542 115 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 MIR3683-201ENST00000580847 82 ntBASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
ZC3H4Q9UPT8 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.41□□□□□ -1.86
ZC3H4Q9UPT8 AP000648.3-201ENST00000623539 4507 ntBASIC3.41□□□□□ -1.86
ZC3H4Q9UPT8 MIR302B-201ENST00000362188 73 ntBASIC3.41□□□□□ -1.86
ZC3H4Q9UPT8 Y_RNA.78-201ENST00000362970 110 ntBASIC3.41□□□□□ -1.86
ZC3H4Q9UPT8 Y_RNA.107-201ENST00000363190 121 ntBASIC3.41□□□□□ -1.86
ZC3H4Q9UPT8 AL627390.1-201ENST00000396055 340 ntBASIC3.41□□□□□ -1.86
ZC3H4Q9UPT8 AL035398.1-201ENST00000430869 322 ntBASIC3.41□□□□□ -1.86
ZC3H4Q9UPT8 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.41□□□□□ -1.86
ZC3H4Q9UPT8 AC078899.2-201ENST00000595282 212 ntBASIC3.41□□□□□ -1.86
ZC3H4Q9UPT8 AL513534.2-201ENST00000603836 250 ntBASIC3.41□□□□□ -1.86
ZC3H4Q9UPT8 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
ZC3H4Q9UPT8 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
ZC3H4Q9UPT8 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.4□□□□□ -1.87
ZC3H4Q9UPT8 RNA5SP425-201ENST00000410336 112 ntBASIC3.4□□□□□ -1.87
ZC3H4Q9UPT8 MIR1912-201ENST00000410389 80 ntBASIC3.4□□□□□ -1.87
ZC3H4Q9UPT8 MIR3169-201ENST00000578032 83 ntBASIC3.4□□□□□ -1.87
ZC3H4Q9UPT8 MIR4648-201ENST00000580107 72 ntBASIC3.4□□□□□ -1.87
ZC3H4Q9UPT8 AC062037.1-201ENST00000605302 128 ntBASIC3.4□□□□□ -1.87
ZC3H4Q9UPT8 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.4□□□□□ -1.87
ZC3H4Q9UPT8 MALAT1.1-201ENST00000618249 95 ntBASIC3.4□□□□□ -1.87
ZC3H4Q9UPT8 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ZC3H4Q9UPT8 RNU4-36P-201ENST00000364294 144 ntBASIC3.39□□□□□ -1.87
ZC3H4Q9UPT8 RNU1-112P-201ENST00000364401 164 ntBASIC3.39□□□□□ -1.87
ZC3H4Q9UPT8 SNORA27-201ENST00000384323 126 ntBASIC3.39□□□□□ -1.87
ZC3H4Q9UPT8 UQCRHP3-201ENST00000451503 251 ntBASIC3.39□□□□□ -1.87
ZC3H4Q9UPT8 DEFB131E-201ENST00000532329 154 ntBASIC3.39□□□□□ -1.87
ZC3H4Q9UPT8 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ZC3H4Q9UPT8 RNU1-91P-201ENST00000364746 163 ntBASIC3.38□□□□□ -1.87
ZC3H4Q9UPT8 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.38□□□□□ -1.87
ZC3H4Q9UPT8 RN7SKP123-201ENST00000410732 291 ntBASIC3.38□□□□□ -1.87
ZC3H4Q9UPT8 AC090821.2-201ENST00000523552 176 ntBASIC3.38□□□□□ -1.87
ZC3H4Q9UPT8 AC026271.5-201ENST00000577873 130 ntBASIC3.38□□□□□ -1.87
ZC3H4Q9UPT8 SNORA28-201ENST00000606769 126 ntBASIC3.38□□□□□ -1.87
ZC3H4Q9UPT8 MIR8054-201ENST00000620877 86 ntBASIC3.38□□□□□ -1.87
ZC3H4Q9UPT8 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 RNY3P2-201ENST00000362918 102 ntBASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 RNU6-1134P-201ENST00000365156 101 ntBASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 RNU6-424P-201ENST00000384367 105 ntBASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 MIR764-201ENST00000390811 85 ntBASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 RNA5SP274-201ENST00000410484 108 ntBASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 AL022718.1-201ENST00000412004 84 ntBASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 AL591806.2-201ENST00000433122 173 ntBASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 MIR4506-201ENST00000584693 77 ntBASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
ZC3H4Q9UPT8 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
ZC3H4Q9UPT8 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.36□□□□□ -1.87
ZC3H4Q9UPT8 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms