Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-484P-201ENST00000384016 107 ntBASIC2.01□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-804P-201ENST00000384286 107 ntBASIC2.01□□□□□ -2.09
LIMCH1Q9UPQ0 SNORA40.18-201ENST00000391200 128 ntBASIC2.01□□□□□ -2.09
LIMCH1Q9UPQ0 AL392103.1-201ENST00000447000 198 ntBASIC2.01□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.01□□□□□ -2.09
LIMCH1Q9UPQ0 SNORA44.1-201ENST00000517031 108 ntBASIC2.01□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-365P-201ENST00000517113 106 ntBASIC2.01□□□□□ -2.09
LIMCH1Q9UPQ0 SNORD114-1-201ENST00000362705 72 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.272-201ENST00000364696 102 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-643P-201ENST00000384018 107 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 SNORD72-201ENST00000390994 80 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.580-201ENST00000391004 95 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 AC107027.2-201ENST00000512197 115 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-561P-201ENST00000516222 102 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.676-201ENST00000516393 96 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-504P-201ENST00000516568 104 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 AC097639.2-201ENST00000603159 172 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 MIR8074-201ENST00000615081 81 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 SNORD3E-202ENST00000627253 216 ntBASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-774P-201ENST00000363238 107 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 RNU4-84P-201ENST00000364200 139 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.486-201ENST00000384398 107 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.506-201ENST00000384494 102 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 MIR1267-201ENST00000408723 78 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 RNU5E-9P-201ENST00000411164 104 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 AC004965.1-201ENST00000413033 213 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 SEPT7P4-201ENST00000437076 306 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 RPL23AP42-201ENST00000471152 471 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 MIR3122-201ENST00000577243 73 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 MIR3133-201ENST00000583157 78 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 AC006441.5-201ENST00000612680 209 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 AC084768.2-201ENST00000622736 221 ntBASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.99□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.8-201ENST00000362353 102 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.170-201ENST00000363746 110 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.634-201ENST00000364811 113 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 RNY1P5-201ENST00000383890 115 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-125P-201ENST00000384505 107 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 MIR583-201ENST00000384846 75 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 MIR194-1-201ENST00000384892 85 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-239P-201ENST00000390990 99 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 RNU4-61P-201ENST00000411243 107 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 snoU13.23-201ENST00000458863 104 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 snoU13.15-201ENST00000459407 104 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 RNU7-200P-201ENST00000516105 62 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.703-201ENST00000516846 111 ntBASIC1.98□□□□□ -2.09
LIMCH1Q9UPQ0 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.337-201ENST00000365312 102 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 SNORD24-201ENST00000383884 75 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 Y_RNA.398-201ENST00000383952 99 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 SNORD38C-201ENST00000384381 69 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 MIR452-201ENST00000385020 85 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 AL161935.2-201ENST00000414627 60 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 RNU7-121P-201ENST00000516604 62 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-1116P-201ENST00000517269 99 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 DEFB122-202ENST00000569013 197 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 MIR378D2-201ENST00000580636 98 ntBASIC1.97□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-449P-201ENST00000383914 107 ntBASIC1.96□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-203P-201ENST00000384038 104 ntBASIC1.96□□□□□ -2.1
LIMCH1Q9UPQ0 MIR1289-2-201ENST00000408360 111 ntBASIC1.96□□□□□ -2.1
LIMCH1Q9UPQ0 AC006461.1-201ENST00000412637 326 ntBASIC1.96□□□□□ -2.1
LIMCH1Q9UPQ0 RPL31P63-201ENST00000422565 375 ntBASIC1.96□□□□□ -2.1
LIMCH1Q9UPQ0 SNORD116-25-201ENST00000516517 92 ntBASIC1.96□□□□□ -2.1
LIMCH1Q9UPQ0 MTND5P41-201ENST00000517498 206 ntBASIC1.96□□□□□ -2.1
LIMCH1Q9UPQ0 AC103810.8-201ENST00000607347 118 ntBASIC1.96□□□□□ -2.1
LIMCH1Q9UPQ0 MTND1P7-201ENST00000632801 297 ntBASIC1.96□□□□□ -2.1
LIMCH1Q9UPQ0 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.95□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-268P-201ENST00000364174 107 ntBASIC1.95□□□□□ -2.1
LIMCH1Q9UPQ0 U8.13-201ENST00000390842 128 ntBASIC1.95□□□□□ -2.1
LIMCH1Q9UPQ0 SNRPGP14-201ENST00000435400 219 ntBASIC1.95□□□□□ -2.1
LIMCH1Q9UPQ0 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.95□□□□□ -2.1
LIMCH1Q9UPQ0 SNRPGP13-201ENST00000442212 177 ntBASIC1.95□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-250P-201ENST00000516958 103 ntBASIC1.95□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-789P-201ENST00000517105 102 ntBASIC1.95□□□□□ -2.1
LIMCH1Q9UPQ0 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-439P-201ENST00000384188 106 ntBASIC1.94□□□□□ -2.1
LIMCH1Q9UPQ0 MIR30A-201ENST00000385092 71 ntBASIC1.94□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-482P-201ENST00000391068 107 ntBASIC1.94□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-199P-201ENST00000362954 107 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 Y_RNA.91-201ENST00000363042 107 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 RNA5SP363-201ENST00000365072 115 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-1130P-201ENST00000365434 107 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 SNORD116-18-201ENST00000383961 92 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 Y_RNA.521-201ENST00000384560 114 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 AC015922.2-201ENST00000435593 184 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 AC108210.2-201ENST00000503681 201 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-830P-201ENST00000516353 107 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 MIR3198-2-201ENST00000577868 80 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 SNORA77B-201ENST00000578179 125 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 MIR8081-201ENST00000611533 95 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms