Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 TRIAP1P1-201ENST00000427062 225 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 RPL23AP7-203ENST00000449021 469 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 RNU6-711P-201ENST00000517255 106 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 AC131280.1-202ENST00000624067 4211 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 RNU6-170P-201ENST00000362832 104 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 RNU6-271P-201ENST00000363858 105 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 RNU6-1229P-201ENST00000364295 107 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 AP1B1P2-201ENST00000416196 106 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 AC004941.2-201ENST00000427009 228 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 SCARNA16.3-201ENST00000516595 184 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 MIR4474-201ENST00000579189 78 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 AL929325.1-201ENST00000603096 117 ntBASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
COL17A1Q9UMD9 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL17A1Q9UMD9 FAM35CP-201ENST00000554755 2470 ntBASIC3.34□□□□□ -1.87
COL17A1Q9UMD9 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.34□□□□□ -1.87
COL17A1Q9UMD9 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
COL17A1Q9UMD9 RNA5SP139-201ENST00000364340 117 ntBASIC3.34□□□□□ -1.88
COL17A1Q9UMD9 RNU6-1104P-201ENST00000384723 104 ntBASIC3.34□□□□□ -1.88
COL17A1Q9UMD9 RNU1-101P-201ENST00000391171 127 ntBASIC3.34□□□□□ -1.88
COL17A1Q9UMD9 AL355796.1-201ENST00000406706 323 ntBASIC3.34□□□□□ -1.88
COL17A1Q9UMD9 MIR1185-2-201ENST00000408687 86 ntBASIC3.34□□□□□ -1.88
COL17A1Q9UMD9 Y_RNA.620-201ENST00000411009 88 ntBASIC3.34□□□□□ -1.88
COL17A1Q9UMD9 RNU6-938P-201ENST00000411285 103 ntBASIC3.34□□□□□ -1.88
COL17A1Q9UMD9 RNU6-63P-201ENST00000516690 95 ntBASIC3.34□□□□□ -1.88
COL17A1Q9UMD9 MIR6766-201ENST00000622641 72 ntBASIC3.34□□□□□ -1.88
COL17A1Q9UMD9 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 AC009487.4-201ENST00000624969 3585 ntBASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 SNORD32B-201ENST00000364460 84 ntBASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 RNU6-590P-201ENST00000365039 107 ntBASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 SNORA11.4-201ENST00000408823 129 ntBASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 AC023449.1-201ENST00000454464 154 ntBASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 RNU7-149P-201ENST00000516739 59 ntBASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 SCARNA15-202ENST00000516881 127 ntBASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL17A1Q9UMD9 SNORA33-201ENST00000363664 130 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 Y_RNA.191-201ENST00000363972 113 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 DEFA7P-201ENST00000382676 285 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 RNY1P4-201ENST00000384595 115 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 MIR873-201ENST00000401120 77 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 MIR1283-1-201ENST00000408494 87 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 RNU4-62P-201ENST00000410125 130 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 SNORD13-201ENST00000459299 104 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 RNU7-14P-201ENST00000459331 62 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 AC114801.3-201ENST00000510231 177 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 TRMT112P2-201ENST00000512910 132 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 RNU6-1098P-201ENST00000516772 96 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 SUMO2P16-201ENST00000519475 264 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 MIR4668-201ENST00000582284 70 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 SNORA4-201ENST00000584302 138 ntBASIC3.32□□□□□ -1.88
COL17A1Q9UMD9 Y_RNA.10-201ENST00000362371 110 ntBASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 Y_RNA.531-201ENST00000384589 121 ntBASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 MIR1912-201ENST00000410389 80 ntBASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 AC096949.1-201ENST00000412047 152 ntBASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 SNORD11-201ENST00000459124 84 ntBASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 RNU7-57P-201ENST00000459540 60 ntBASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 AC080013.2-201ENST00000460866 323 ntBASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 AP001486.2-201ENST00000561652 5113 ntBASIC3.31□□□□□ -1.88
COL17A1Q9UMD9 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL17A1Q9UMD9 RNU6-1209P-201ENST00000363655 107 ntBASIC3.3□□□□□ -1.88
COL17A1Q9UMD9 Y_RNA.316-201ENST00000365118 111 ntBASIC3.3□□□□□ -1.88
COL17A1Q9UMD9 RNU6-1292P-201ENST00000383856 107 ntBASIC3.3□□□□□ -1.88
COL17A1Q9UMD9 HMGN2P9-201ENST00000476875 229 ntBASIC3.3□□□□□ -1.88
COL17A1Q9UMD9 RPS26P48-201ENST00000491713 339 ntBASIC3.3□□□□□ -1.88
COL17A1Q9UMD9 AC022523.2-201ENST00000561045 150 ntBASIC3.3□□□□□ -1.88
COL17A1Q9UMD9 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL17A1Q9UMD9 MRPL35P3-201ENST00000421557 364 ntBASIC3.29□□□□□ -1.88
COL17A1Q9UMD9 RNU2-11P-201ENST00000459191 187 ntBASIC3.29□□□□□ -1.88
COL17A1Q9UMD9 MIR4777-201ENST00000583710 86 ntBASIC3.29□□□□□ -1.88
COL17A1Q9UMD9 MIR548BB-201ENST00000626714 66 ntBASIC3.29□□□□□ -1.88
COL17A1Q9UMD9 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL17A1Q9UMD9 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
COL17A1Q9UMD9 SNORA14A-201ENST00000364773 135 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 Y_RNA.298-201ENST00000364960 107 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 RNU6-409P-201ENST00000384114 104 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 RNA5SP511-201ENST00000410487 115 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 SNRPGP10-201ENST00000432323 225 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 OR9P1P-201ENST00000496431 281 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 Y_RNA.659-201ENST00000515994 113 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 SNORD59.2-201ENST00000516873 68 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 UCA1.1-201ENST00000620952 75 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 RNU6-944P-201ENST00000364023 107 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 Y_RNA.203-201ENST00000364106 102 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 RNU6-60P-201ENST00000364792 103 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 RNU6-690P-201ENST00000365242 106 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 RNU6-1138P-201ENST00000365359 106 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 MIR583-201ENST00000384846 75 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 RPS26P55-201ENST00000471178 356 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms