Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SUMO1P3-201ENST00000439961 304 ntBASIC1.99□□□□□ -2.09
TDP1Q9NUW8 AC006441.5-201ENST00000612680 209 ntBASIC1.99□□□□□ -2.09
TDP1Q9NUW8 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
TDP1Q9NUW8 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
TDP1Q9NUW8 RNU6-768P-201ENST00000384683 107 ntBASIC1.98□□□□□ -2.09
TDP1Q9NUW8 AC093850.1-201ENST00000454121 251 ntBASIC1.98□□□□□ -2.09
TDP1Q9NUW8 AC025033.1-201ENST00000463883 194 ntBASIC1.98□□□□□ -2.09
TDP1Q9NUW8 SNORD116-25-201ENST00000516517 92 ntBASIC1.98□□□□□ -2.09
TDP1Q9NUW8 RNU6-504P-201ENST00000516568 104 ntBASIC1.98□□□□□ -2.09
TDP1Q9NUW8 MIR4778-201ENST00000577635 80 ntBASIC1.98□□□□□ -2.09
TDP1Q9NUW8 AL096840.1-201ENST00000603287 93 ntBASIC1.98□□□□□ -2.09
TDP1Q9NUW8 SNORD3E-202ENST00000627253 216 ntBASIC1.98□□□□□ -2.09
TDP1Q9NUW8 AC095038.3-201ENST00000634439 195 ntBASIC1.98□□□□□ -2.09
TDP1Q9NUW8 MIR3658-201ENST00000636291 56 ntBASIC1.98□□□□□ -2.09
TDP1Q9NUW8 RNU6-661P-201ENST00000362409 107 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 RNU1-17P-201ENST00000363022 152 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 RNU6-414P-201ENST00000363705 104 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 RNA5SP160-201ENST00000364866 120 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 SNORD24-201ENST00000383884 75 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 RNU4-52P-201ENST00000384209 138 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 SNORD61-201ENST00000384252 73 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 MIR194-1-201ENST00000384892 85 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 SNRPGP13-201ENST00000442212 177 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 AL021397.1-201ENST00000451806 248 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 RNU7-200P-201ENST00000516105 62 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 RNA5SP458-201ENST00000516188 119 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 AC002984.1-201ENST00000591692 448 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 DNAJC19P2-201ENST00000593340 302 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 AL365434.2-201ENST00000607979 234 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 AL627230.6-201ENST00000611129 280 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.97□□□□□ -2.09
TDP1Q9NUW8 AP000553.5-201ENST00000641933 54 ntBASIC1.97□□□□□ -2.09
TDP1Q9NUW8 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
TDP1Q9NUW8 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.09
TDP1Q9NUW8 AL359851.1-201ENST00000569460 4997 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
TDP1Q9NUW8 RNU6-1123P-201ENST00000362347 106 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 RNU6-888P-201ENST00000363010 101 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 Y_RNA.393-201ENST00000383936 102 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 MIR548O-201ENST00000408583 114 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 AL161935.2-201ENST00000414627 60 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 JTBP1-201ENST00000441314 247 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 RNU1-40P-201ENST00000516816 164 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 RNU1-97P-201ENST00000516872 164 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 RNU6-1270P-201ENST00000517128 108 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 AC007751.1-201ENST00000529260 376 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 Y_RNA.778-201ENST00000620203 90 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 MTND1P7-201ENST00000632801 297 ntBASIC1.96□□□□□ -2.1
TDP1Q9NUW8 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
TDP1Q9NUW8 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
TDP1Q9NUW8 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.95□□□□□ -2.1
TDP1Q9NUW8 ICE2P2-201ENST00000483823 2787 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 RNU6-774P-201ENST00000363238 107 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 RNU6-151P-201ENST00000364158 107 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 RNU6-818P-201ENST00000364837 108 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 RNU6-597P-201ENST00000365620 102 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 Y_RNA.506-201ENST00000384494 102 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 MIR548A2-201ENST00000384956 97 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 AL603908.1-201ENST00000406098 201 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 RNA5SP338-201ENST00000410495 85 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 AC004965.1-201ENST00000413033 213 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 AC003989.2-201ENST00000440224 169 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 RNU6-717P-201ENST00000459076 104 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 RNU6-693P-201ENST00000516134 107 ntBASIC1.95□□□□□ -2.1
TDP1Q9NUW8 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
TDP1Q9NUW8 RNU6-125P-201ENST00000384505 107 ntBASIC1.94□□□□□ -2.1
TDP1Q9NUW8 MIR518F-201ENST00000384973 87 ntBASIC1.94□□□□□ -2.1
TDP1Q9NUW8 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
TDP1Q9NUW8 RNU7-25P-201ENST00000516544 62 ntBASIC1.94□□□□□ -2.1
TDP1Q9NUW8 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.94□□□□□ -2.1
TDP1Q9NUW8 MIR4448-201ENST00000584360 86 ntBASIC1.94□□□□□ -2.1
TDP1Q9NUW8 AC103810.8-201ENST00000607347 118 ntBASIC1.94□□□□□ -2.1
TDP1Q9NUW8 AL442644.1-201ENST00000454390 3105 ntBASIC1.94□□□□□ -2.1
TDP1Q9NUW8 Y_RNA.140-201ENST00000363474 103 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 RNU4-11P-201ENST00000365287 132 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 RNU6-1336P-201ENST00000383886 109 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 RNY1P5-201ENST00000383890 115 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 RNU6-746P-201ENST00000384112 109 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 SNORD38C-201ENST00000384381 69 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 Y_RNA.547-201ENST00000384654 119 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 MIR452-201ENST00000385020 85 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
TDP1Q9NUW8 MIR548M-201ENST00000408260 86 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 MIR1267-201ENST00000408723 78 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.93□□□□□ -2.1
TDP1Q9NUW8 AC015922.2-201ENST00000435593 184 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 AC090142.3-201ENST00000519012 385 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 SUMO2P16-201ENST00000519475 264 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 MIR3646-201ENST00000578301 84 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 MIR3133-201ENST00000583157 78 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 MIR6844-201ENST00000637122 62 ntBASIC1.93□□□□□ -2.1
TDP1Q9NUW8 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
TDP1Q9NUW8 SNORA25.7-201ENST00000364375 127 ntBASIC1.92□□□□□ -2.1
TDP1Q9NUW8 Y_RNA.400-201ENST00000383963 111 ntBASIC1.92□□□□□ -2.1
TDP1Q9NUW8 SNORA1-201ENST00000384107 130 ntBASIC1.92□□□□□ -2.1
TDP1Q9NUW8 SNORD37.2-201ENST00000391075 66 ntBASIC1.92□□□□□ -2.1
TDP1Q9NUW8 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.92□□□□□ -2.1
TDP1Q9NUW8 RNU6-346P-201ENST00000516288 111 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 181.6 ms