Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SNORD115-42-201ENST00000364273 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-15-201ENST00000364809 81 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-1-201ENST00000364961 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-26-201ENST00000365067 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-10-201ENST00000365073 81 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-43-201ENST00000365503 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-36-201ENST00000365629 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 RNU6-1065P-201ENST00000384513 106 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORA40.5-201ENST00000391061 128 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNX2P2-201ENST00000424553 323 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 RNU7-43P-201ENST00000516554 64 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 MIR3935-201ENST00000583472 104 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 AL357312.1-201ENST00000603879 298 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 AC012493.3-201ENST00000604494 112 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-40-201ENST00000606510 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 Y_RNA.241-201ENST00000364470 117 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 SNORD1A-201ENST00000364968 72 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 Y_RNA.333-201ENST00000365274 102 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 SNORA70.4-201ENST00000365509 134 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 RNU6-125P-201ENST00000384505 107 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 Y_RNA.584-201ENST00000391090 114 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 AL627390.1-201ENST00000396055 340 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 MIR934-201ENST00000401241 83 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 SNORA11.1-201ENST00000408133 129 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 RPL23AP83-201ENST00000434984 473 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 SUMO1P3-201ENST00000439961 304 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 RNU7-181P-201ENST00000517234 74 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 MIR3133-201ENST00000583157 78 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 AL365434.2-201ENST00000607979 234 ntBASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CLRN3Q8NCR9 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 MIR208A-201ENST00000362287 71 ntBASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 Y_RNA.370-201ENST00000365589 108 ntBASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 SNORA70.7-201ENST00000384159 133 ntBASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 MIR483-201ENST00000385070 76 ntBASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 RAB6C-AS1-202ENST00000433431 123 ntBASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 RNU1-40P-201ENST00000516816 164 ntBASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 RNU1-97P-201ENST00000516872 164 ntBASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 RNU6-250P-201ENST00000516958 103 ntBASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 MIR4422-201ENST00000581938 83 ntBASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
CLRN3Q8NCR9 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 SNORD114-30-201ENST00000364448 72 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 RNU6-1336P-201ENST00000383886 109 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 AL138827.1-201ENST00000402666 306 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 RNU6-938P-201ENST00000411285 103 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 RN7SL274P-201ENST00000492268 272 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 SNORA25.12-201ENST00000516202 82 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 SNORD36C-201ENST00000516733 66 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 RNU6-922P-201ENST00000516753 99 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 MIR3937-201ENST00000580135 106 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 ELOCP29-201ENST00000588193 334 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 AC067747.1-201ENST00000608026 250 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 SCARNA4.1-201ENST00000628597 123 ntBASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.86□□□□□ -2.11
CLRN3Q8NCR9 SNORA27-201ENST00000384323 126 ntBASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 Y_RNA.497-201ENST00000384447 98 ntBASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 AL359511.1-201ENST00000402970 211 ntBASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 AL023284.1-201ENST00000403956 276 ntBASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 MTATP6P21-201ENST00000440681 189 ntBASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 AC025033.1-201ENST00000463883 194 ntBASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 RPL30P7-201ENST00000479312 323 ntBASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 AC090821.2-201ENST00000523552 176 ntBASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 GHRLOS.1-201ENST00000610995 70 ntBASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CLRN3Q8NCR9 RNU6-774P-201ENST00000363238 107 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 SNORD18B-201ENST00000365659 72 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 Y_RNA.440-201ENST00000384120 114 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 MIR520C-201ENST00000385005 87 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 MIR9-1-201ENST00000385198 89 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 MIR569-201ENST00000385228 96 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 RNU1-78P-201ENST00000391248 165 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 RNA5SP21-201ENST00000410917 96 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 AC087499.2-201ENST00000432861 149 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 AC027119.1-201ENST00000440877 241 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 AC245517.4-201ENST00000448601 281 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 SNORD111.1-201ENST00000516421 86 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 RNU7-70P-201ENST00000516941 66 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 MIR548AR-201ENST00000582191 57 ntBASIC1.84□□□□□ -2.11
CLRN3Q8NCR9 Y_RNA.52-201ENST00000362760 96 ntBASIC1.83□□□□□ -2.12
CLRN3Q8NCR9 Y_RNA.251-201ENST00000364551 99 ntBASIC1.83□□□□□ -2.12
CLRN3Q8NCR9 SNORD50.2-201ENST00000365465 70 ntBASIC1.83□□□□□ -2.12
CLRN3Q8NCR9 Y_RNA.454-201ENST00000384224 113 ntBASIC1.83□□□□□ -2.12
CLRN3Q8NCR9 SNORA44-201ENST00000384584 132 ntBASIC1.83□□□□□ -2.12
CLRN3Q8NCR9 Y_RNA.537-201ENST00000384626 109 ntBASIC1.83□□□□□ -2.12
CLRN3Q8NCR9 SNORD41-201ENST00000386967 70 ntBASIC1.83□□□□□ -2.12
CLRN3Q8NCR9 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC1.83□□□□□ -2.12
CLRN3Q8NCR9 CYCSP49-201ENST00000420810 319 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms