Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RPL23AP63-201ENST00000498752 471 ntBASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 RNU6-113P-201ENST00000516653 101 ntBASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 MIR4658-201ENST00000584344 65 ntBASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 MIR5002-201ENST00000584713 97 ntBASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
USHBP1Q8N6Y0 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
USHBP1Q8N6Y0 RNA5SP493-201ENST00000364115 91 ntBASIC2.68□□□□□ -1.98
USHBP1Q8N6Y0 MIR548A2-201ENST00000384956 97 ntBASIC2.68□□□□□ -1.98
USHBP1Q8N6Y0 SNORA26.9-201ENST00000391322 122 ntBASIC2.68□□□□□ -1.98
USHBP1Q8N6Y0 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.68□□□□□ -1.98
USHBP1Q8N6Y0 SNORA31.15-201ENST00000516771 132 ntBASIC2.68□□□□□ -1.98
USHBP1Q8N6Y0 MIR4679-2-201ENST00000578358 77 ntBASIC2.68□□□□□ -1.98
USHBP1Q8N6Y0 MTND5P18-201ENST00000445624 1801 ntBASIC2.68□□□□□ -1.98
USHBP1Q8N6Y0 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 RNU6-1084P-201ENST00000362498 107 ntBASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 Y_RNA.35-201ENST00000362601 101 ntBASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 SNORD68-201ENST00000363214 84 ntBASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 RNU6-1164P-201ENST00000364428 107 ntBASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 MIR583-201ENST00000384846 75 ntBASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 MIR548A1-201ENST00000385041 97 ntBASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 RNU6-1149P-201ENST00000516810 97 ntBASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 IGKV1-22-201ENST00000524313 326 ntBASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 MIR4762-201ENST00000585261 75 ntBASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 FO624990.1-201ENST00000636373 85 ntBASIC2.67□□□□□ -1.98
USHBP1Q8N6Y0 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
USHBP1Q8N6Y0 MIR518F-201ENST00000384973 87 ntBASIC2.66□□□□□ -1.98
USHBP1Q8N6Y0 MIR1263-201ENST00000408324 86 ntBASIC2.66□□□□□ -1.98
USHBP1Q8N6Y0 SCARNA15-202ENST00000516881 127 ntBASIC2.66□□□□□ -1.98
USHBP1Q8N6Y0 MIR3613-201ENST00000579844 87 ntBASIC2.66□□□□□ -1.98
USHBP1Q8N6Y0 MIR5089-201ENST00000580047 84 ntBASIC2.66□□□□□ -1.98
USHBP1Q8N6Y0 AC006441.5-201ENST00000612680 209 ntBASIC2.66□□□□□ -1.98
USHBP1Q8N6Y0 AC134878.1-201ENST00000619901 243 ntBASIC2.66□□□□□ -1.98
USHBP1Q8N6Y0 AC010297.1-201ENST00000623948 149 ntBASIC2.66□□□□□ -1.98
USHBP1Q8N6Y0 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.66□□□□□ -1.98
USHBP1Q8N6Y0 VTRNA1-1-201ENST00000363120 99 ntBASIC2.65□□□□□ -1.99
USHBP1Q8N6Y0 RNU6-442P-201ENST00000383968 104 ntBASIC2.65□□□□□ -1.99
USHBP1Q8N6Y0 Y_RNA.410-201ENST00000383992 113 ntBASIC2.65□□□□□ -1.99
USHBP1Q8N6Y0 SNORA17.3-201ENST00000391159 129 ntBASIC2.65□□□□□ -1.99
USHBP1Q8N6Y0 AC026271.5-201ENST00000577873 130 ntBASIC2.65□□□□□ -1.99
USHBP1Q8N6Y0 MIR3169-201ENST00000578032 83 ntBASIC2.65□□□□□ -1.99
USHBP1Q8N6Y0 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 SNORD14E-201ENST00000364009 85 ntBASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 U8.5-201ENST00000364528 136 ntBASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 snoU2-30.1-201ENST00000365012 70 ntBASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 RNU6-147P-201ENST00000383983 107 ntBASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 RNU6-880P-201ENST00000384526 107 ntBASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 Y_RNA.528-201ENST00000384575 108 ntBASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 RNA5SP482-201ENST00000391269 118 ntBASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 RNA5SP136-201ENST00000410906 107 ntBASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 AC099677.2-201ENST00000436385 175 ntBASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 RNU7-28P-201ENST00000516759 62 ntBASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
USHBP1Q8N6Y0 RNU6-23P-201ENST00000363283 107 ntBASIC2.63□□□□□ -1.99
USHBP1Q8N6Y0 MIR548O-201ENST00000408583 114 ntBASIC2.63□□□□□ -1.99
USHBP1Q8N6Y0 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.63□□□□□ -1.99
USHBP1Q8N6Y0 SNORD45.4-201ENST00000516629 73 ntBASIC2.63□□□□□ -1.99
USHBP1Q8N6Y0 MIR5197-201ENST00000583721 112 ntBASIC2.63□□□□□ -1.99
USHBP1Q8N6Y0 AL137067.1-201ENST00000615933 120 ntBASIC2.63□□□□□ -1.99
USHBP1Q8N6Y0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
USHBP1Q8N6Y0 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
USHBP1Q8N6Y0 RNU6-268P-201ENST00000364174 107 ntBASIC2.62□□□□□ -1.99
USHBP1Q8N6Y0 Y_RNA.336-201ENST00000365307 109 ntBASIC2.62□□□□□ -1.99
USHBP1Q8N6Y0 AL445685.2-201ENST00000422551 342 ntBASIC2.62□□□□□ -1.99
USHBP1Q8N6Y0 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.62□□□□□ -1.99
USHBP1Q8N6Y0 AP000942.3-201ENST00000603702 160 ntBASIC2.62□□□□□ -1.99
USHBP1Q8N6Y0 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.62□□□□□ -1.99
USHBP1Q8N6Y0 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USHBP1Q8N6Y0 SNORD115-28-201ENST00000363931 81 ntBASIC2.61□□□□□ -1.99
USHBP1Q8N6Y0 Y_RNA.265-201ENST00000364677 108 ntBASIC2.61□□□□□ -1.99
USHBP1Q8N6Y0 RNU6-1189P-201ENST00000383958 107 ntBASIC2.61□□□□□ -1.99
USHBP1Q8N6Y0 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.61□□□□□ -1.99
USHBP1Q8N6Y0 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.61□□□□□ -1.99
USHBP1Q8N6Y0 AC245047.3-201ENST00000429428 127 ntBASIC2.61□□□□□ -1.99
USHBP1Q8N6Y0 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.61□□□□□ -1.99
USHBP1Q8N6Y0 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.61□□□□□ -1.99
USHBP1Q8N6Y0 AC008555.8-201ENST00000623602 2168 ntBASIC2.61□□□□□ -1.99
USHBP1Q8N6Y0 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USHBP1Q8N6Y0 RNU6-1298P-201ENST00000362456 101 ntBASIC2.6□□□□□ -1.99
USHBP1Q8N6Y0 SNORA2.2-201ENST00000365473 135 ntBASIC2.6□□□□□ -1.99
USHBP1Q8N6Y0 MIR29C-201ENST00000385231 88 ntBASIC2.6□□□□□ -1.99
USHBP1Q8N6Y0 SNRPGP14-201ENST00000435400 219 ntBASIC2.6□□□□□ -1.99
USHBP1Q8N6Y0 RPS26P48-201ENST00000491713 339 ntBASIC2.6□□□□□ -1.99
USHBP1Q8N6Y0 RNU6-412P-201ENST00000516434 106 ntBASIC2.6□□□□□ -1.99
USHBP1Q8N6Y0 AC005786.1-201ENST00000588553 154 ntBASIC2.6□□□□□ -1.99
USHBP1Q8N6Y0 MIR376A2-201ENST00000636782 80 ntBASIC2.6□□□□□ -1.99
USHBP1Q8N6Y0 Y_RNA.37-201ENST00000362606 108 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 SNORA38-201ENST00000363946 132 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 RNA5SP160-201ENST00000364866 120 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 Y_RNA.366-201ENST00000365540 102 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 RNU1-148P-201ENST00000384472 162 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 Y_RNA.547-201ENST00000384654 119 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 SUMO1P4-201ENST00000429430 302 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 CALM2P4-201ENST00000430810 426 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 AC104435.1-201ENST00000483483 166 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 RNU7-25P-201ENST00000516544 62 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms