Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 AC078899.2-201ENST00000595282 212 ntBASIC2.11□□□□□ -2.07
SLC44A4Q53GD3 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SLC44A4Q53GD3 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SLC44A4Q53GD3 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SLC44A4Q53GD3 Y_RNA.91-201ENST00000363042 107 ntBASIC2.1□□□□□ -2.07
SLC44A4Q53GD3 Y_RNA.251-201ENST00000364551 99 ntBASIC2.1□□□□□ -2.07
SLC44A4Q53GD3 RNU1-40P-201ENST00000516816 164 ntBASIC2.1□□□□□ -2.07
SLC44A4Q53GD3 RNU1-97P-201ENST00000516872 164 ntBASIC2.1□□□□□ -2.07
SLC44A4Q53GD3 MIR2681-201ENST00000581814 105 ntBASIC2.1□□□□□ -2.07
SLC44A4Q53GD3 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.1□□□□□ -2.07
SLC44A4Q53GD3 Pinc.1-201ENST00000616452 154 ntBASIC2.1□□□□□ -2.07
SLC44A4Q53GD3 MIR8054-201ENST00000620877 86 ntBASIC2.1□□□□□ -2.07
SLC44A4Q53GD3 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 SNORA75.5-201ENST00000391291 81 ntBASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 RNU2-55P-201ENST00000411146 174 ntBASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 AC108667.1-201ENST00000428618 249 ntBASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 RNU7-94P-201ENST00000459576 63 ntBASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 SNORD77.4-201ENST00000516158 81 ntBASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 MIR3935-201ENST00000583472 104 ntBASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 AC011603.4-201ENST00000611325 277 ntBASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.09□□□□□ -2.07
SLC44A4Q53GD3 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 RNU6-978P-201ENST00000364371 103 ntBASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.634-201ENST00000364811 113 ntBASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 RNU6-597P-201ENST00000365620 102 ntBASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 RNU2-70P-201ENST00000410718 179 ntBASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 AL158823.1-201ENST00000418441 478 ntBASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 AC008267.6-201ENST00000441664 139 ntBASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 AC069257.2-201ENST00000441819 155 ntBASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 RNU6-1333P-201ENST00000516162 93 ntBASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 RNU7-149P-201ENST00000516739 59 ntBASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 MIR5002-201ENST00000584713 97 ntBASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.226-201ENST00000364337 114 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 RNA5SP160-201ENST00000364866 120 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.294-201ENST00000364916 102 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.486-201ENST00000384398 107 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 MIR562-201ENST00000384894 95 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 MIR17-201ENST00000385012 84 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 SNORA12.1-201ENST00000390873 148 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 RNU6-440P-201ENST00000390882 105 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 AL445685.2-201ENST00000422551 342 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 STAG3L5P-204ENST00000443759 179 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 AC023449.1-201ENST00000454464 154 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 NDUFA4P2-201ENST00000489989 244 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 AP001328.1-201ENST00000528550 176 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 AC012493.3-201ENST00000604494 112 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 JPX_2.1-201ENST00000614161 69 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 TUG1_4.1-201ENST00000619464 181 ntBASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.127-201ENST00000363386 109 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 RNU6-915P-201ENST00000364943 103 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 MIR539-201ENST00000365690 78 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 RNU6-439P-201ENST00000384188 106 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.525-201ENST00000384570 113 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 RNU11-5P-201ENST00000391216 129 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 RNU7-34P-201ENST00000459394 64 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 RN7SL274P-201ENST00000492268 272 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 AC090142.3-201ENST00000519012 385 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 AP002004.2-201ENST00000531656 154 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 MIR4299-201ENST00000577899 72 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 MIR4781-201ENST00000585250 76 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 SNRPGP19-201ENST00000603826 189 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 AL773524.1-201ENST00000614065 229 ntBASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.81-201ENST00000362997 102 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.253-201ENST00000364562 112 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 RNA5SP205-201ENST00000364653 136 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 SNORD116-14-201ENST00000383894 92 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 SNORD116-17-201ENST00000383929 92 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 SNORD116-15-201ENST00000384445 92 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 SNORD116-19-201ENST00000384729 92 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.584-201ENST00000391090 114 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 MLLT10P1-201ENST00000418346 262 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 OR9P1P-201ENST00000496431 281 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 RNA5SP153-201ENST00000516498 76 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 AL591926.4-201ENST00000616895 298 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 AP001340.1-201ENST00000624405 217 ntBASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SLC44A4Q53GD3 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 U8.1-201ENST00000362843 134 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 SNORA25.7-201ENST00000364375 127 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.265-201ENST00000364677 108 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 SNORD72-201ENST00000390994 80 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 AC244636.1-201ENST00000421152 228 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 SNRPGP10-201ENST00000432323 225 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 snoU13.27-201ENST00000459278 104 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 AC025033.1-201ENST00000463883 194 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 AL049830.1-201ENST00000468034 425 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 HMGN1P7-201ENST00000491722 313 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 RNU4-57P-201ENST00000515980 135 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 Y_RNA.686-201ENST00000516548 134 ntBASIC2.04□□□□□ -2.08
SLC44A4Q53GD3 AL160236.1-201ENST00000556317 195 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 179.5 ms