Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 MIR6129-201ENST00000616087 109 ntBASIC1.87□□□□□ -2.11
TTC3P53804 RNY1P10-201ENST00000363268 113 ntBASIC1.86□□□□□ -2.11
TTC3P53804 Y_RNA.267-201ENST00000364679 109 ntBASIC1.86□□□□□ -2.11
TTC3P53804 SNORD18B-201ENST00000365659 72 ntBASIC1.86□□□□□ -2.11
TTC3P53804 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
TTC3P53804 AC245047.3-201ENST00000429428 127 ntBASIC1.86□□□□□ -2.11
TTC3P53804 RNU6-1041P-201ENST00000516254 102 ntBASIC1.86□□□□□ -2.11
TTC3P53804 RNU2-60P-201ENST00000517290 128 ntBASIC1.86□□□□□ -2.11
TTC3P53804 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.86□□□□□ -2.11
TTC3P53804 AP002004.2-201ENST00000531656 154 ntBASIC1.86□□□□□ -2.11
TTC3P53804 AC090049.2-201ENST00000550377 109 ntBASIC1.86□□□□□ -2.11
TTC3P53804 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
TTC3P53804 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
TTC3P53804 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
TTC3P53804 RNU2-70P-201ENST00000410718 179 ntBASIC1.86□□□□□ -2.11
TTC3P53804 RNA5SP127-201ENST00000411051 133 ntBASIC1.86□□□□□ -2.11
TTC3P53804 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.86□□□□□ -2.11
TTC3P53804 MRPS17P9-201ENST00000511924 393 ntBASIC1.86□□□□□ -2.11
TTC3P53804 RN7SKP179-201ENST00000516126 217 ntBASIC1.86□□□□□ -2.11
TTC3P53804 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.86□□□□□ -2.11
TTC3P53804 AC007751.1-201ENST00000529260 376 ntBASIC1.86□□□□□ -2.11
TTC3P53804 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.86□□□□□ -2.11
TTC3P53804 AL591926.4-201ENST00000616895 298 ntBASIC1.86□□□□□ -2.11
TTC3P53804 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
TTC3P53804 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
TTC3P53804 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.85□□□□□ -2.11
TTC3P53804 RNU6-1209P-201ENST00000363655 107 ntBASIC1.85□□□□□ -2.11
TTC3P53804 Y_RNA.280-201ENST00000364765 112 ntBASIC1.85□□□□□ -2.11
TTC3P53804 SNORD50B-201ENST00000364995 70 ntBASIC1.85□□□□□ -2.11
TTC3P53804 MIR515-2-201ENST00000384883 83 ntBASIC1.85□□□□□ -2.11
TTC3P53804 MIR515-1-201ENST00000384884 83 ntBASIC1.85□□□□□ -2.11
TTC3P53804 AL117342.1-201ENST00000404861 406 ntBASIC1.85□□□□□ -2.11
TTC3P53804 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.85□□□□□ -2.11
TTC3P53804 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.85□□□□□ -2.11
TTC3P53804 RNA5SP236-201ENST00000516169 116 ntBASIC1.85□□□□□ -2.11
TTC3P53804 MIR8081-201ENST00000611533 95 ntBASIC1.85□□□□□ -2.11
TTC3P53804 AL603914.1-201ENST00000401964 204 ntBASIC1.84□□□□□ -2.11
TTC3P53804 AC069257.2-201ENST00000441819 155 ntBASIC1.84□□□□□ -2.11
TTC3P53804 SNRPGP13-201ENST00000442212 177 ntBASIC1.84□□□□□ -2.11
TTC3P53804 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.84□□□□□ -2.11
TTC3P53804 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.84□□□□□ -2.11
TTC3P53804 AC090255.1-201ENST00000495779 349 ntBASIC1.84□□□□□ -2.11
TTC3P53804 AC022217.4-201ENST00000604389 163 ntBASIC1.84□□□□□ -2.11
TTC3P53804 AL670379.3-201ENST00000605040 251 ntBASIC1.84□□□□□ -2.11
TTC3P53804 AC006441.5-201ENST00000612680 209 ntBASIC1.84□□□□□ -2.11
TTC3P53804 AL365222.1-201ENST00000614661 98 ntBASIC1.84□□□□□ -2.11
TTC3P53804 MIR8054-201ENST00000620877 86 ntBASIC1.84□□□□□ -2.11
TTC3P53804 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.11
TTC3P53804 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.84□□□□□ -2.11
TTC3P53804 snoU2-30.1-201ENST00000365012 70 ntBASIC1.84□□□□□ -2.12
TTC3P53804 SNORA25B-201ENST00000365507 128 ntBASIC1.84□□□□□ -2.12
TTC3P53804 SNORA12.1-201ENST00000390873 148 ntBASIC1.84□□□□□ -2.12
TTC3P53804 Y_RNA.617-201ENST00000410920 90 ntBASIC1.84□□□□□ -2.12
TTC3P53804 MLLT10P1-201ENST00000418346 262 ntBASIC1.84□□□□□ -2.12
TTC3P53804 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.84□□□□□ -2.12
TTC3P53804 FTH1P12-201ENST00000432137 551 ntBASIC1.84□□□□□ -2.12
TTC3P53804 RPS27P1-201ENST00000450552 247 ntBASIC1.84□□□□□ -2.12
TTC3P53804 RNU6-1299P-201ENST00000516316 100 ntBASIC1.84□□□□□ -2.12
TTC3P53804 Y_RNA.686-201ENST00000516548 134 ntBASIC1.84□□□□□ -2.12
TTC3P53804 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
TTC3P53804 RNU6-1144P-201ENST00000384247 104 ntBASIC1.83□□□□□ -2.12
TTC3P53804 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
TTC3P53804 RNA5SP482-201ENST00000391269 118 ntBASIC1.83□□□□□ -2.12
TTC3P53804 Y_RNA.630-201ENST00000411370 108 ntBASIC1.83□□□□□ -2.12
TTC3P53804 RN7SKP101-201ENST00000411376 320 ntBASIC1.83□□□□□ -2.12
TTC3P53804 AC245047.4-201ENST00000433189 144 ntBASIC1.83□□□□□ -2.12
TTC3P53804 RNU4-57P-201ENST00000515980 135 ntBASIC1.83□□□□□ -2.12
TTC3P53804 RNU6-919P-201ENST00000516731 104 ntBASIC1.83□□□□□ -2.12
TTC3P53804 RNU6-1096P-201ENST00000517089 102 ntBASIC1.83□□□□□ -2.12
TTC3P53804 RNU7-128P-201ENST00000517247 62 ntBASIC1.83□□□□□ -2.12
TTC3P53804 AC007229.1-201ENST00000590455 412 ntBASIC1.83□□□□□ -2.12
TTC3P53804 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.83□□□□□ -2.12
TTC3P53804 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.83□□□□□ -2.12
TTC3P53804 RNU6-508P-201ENST00000363231 103 ntBASIC1.83□□□□□ -2.12
TTC3P53804 SNORA25.7-201ENST00000364375 127 ntBASIC1.83□□□□□ -2.12
TTC3P53804 RNA5SP323-201ENST00000391094 133 ntBASIC1.83□□□□□ -2.12
TTC3P53804 MIR548O-201ENST00000408583 114 ntBASIC1.83□□□□□ -2.12
TTC3P53804 AC099677.2-201ENST00000436385 175 ntBASIC1.83□□□□□ -2.12
TTC3P53804 NDUFA4P2-201ENST00000489989 244 ntBASIC1.83□□□□□ -2.12
TTC3P53804 RNU6-504P-201ENST00000516568 104 ntBASIC1.83□□□□□ -2.12
TTC3P53804 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.83□□□□□ -2.12
TTC3P53804 Y_RNA.291-201ENST00000364886 113 ntBASIC1.82□□□□□ -2.12
TTC3P53804 Y_RNA.486-201ENST00000384398 107 ntBASIC1.82□□□□□ -2.12
TTC3P53804 SNORD37.2-201ENST00000391075 66 ntBASIC1.82□□□□□ -2.12
TTC3P53804 MIR1283-2-201ENST00000408621 87 ntBASIC1.82□□□□□ -2.12
TTC3P53804 RNU6-772P-201ENST00000516042 105 ntBASIC1.82□□□□□ -2.12
TTC3P53804 RNU6-1270P-201ENST00000517128 108 ntBASIC1.82□□□□□ -2.12
TTC3P53804 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.82□□□□□ -2.12
TTC3P53804 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.82□□□□□ -2.12
TTC3P53804 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.82□□□□□ -2.12
TTC3P53804 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
TTC3P53804 RNU6-44P-201ENST00000384045 107 ntBASIC1.81□□□□□ -2.12
TTC3P53804 SNORD38C-201ENST00000384381 69 ntBASIC1.81□□□□□ -2.12
TTC3P53804 MIR1287-201ENST00000408492 90 ntBASIC1.81□□□□□ -2.12
TTC3P53804 RNA5SP489-201ENST00000410986 109 ntBASIC1.81□□□□□ -2.12
TTC3P53804 AC084364.2-201ENST00000546924 395 ntBASIC1.81□□□□□ -2.12
TTC3P53804 AC008507.4-201ENST00000585464 127 ntBASIC1.81□□□□□ -2.12
TTC3P53804 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
TTC3P53804 MTND5P32-201ENST00000560711 1802 ntBASIC1.81□□□□□ -2.12
TTC3P53804 MIRLET7C-201ENST00000362160 84 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms