Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 AL365205.2-201ENST00000594586 68 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 AC120024.3-201ENST00000603167 156 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 AC006441.5-201ENST00000612680 209 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 AP001340.1-201ENST00000624405 217 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
PDLIM4P50479 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
PDLIM4P50479 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
PDLIM4P50479 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
PDLIM4P50479 RNU6-888P-201ENST00000363010 101 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 Y_RNA.91-201ENST00000363042 107 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 RNU6-112P-201ENST00000363599 104 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 SNORA25.7-201ENST00000364375 127 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 RNA5SP160-201ENST00000364866 120 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 Y_RNA.336-201ENST00000365307 109 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 RNU6-296P-201ENST00000384608 107 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 MIR520A-201ENST00000384862 85 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 Y_RNA.586-201ENST00000391146 98 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 MIR513C-201ENST00000401352 84 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 RN7SKP200-201ENST00000410564 320 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 RNA5SP501-201ENST00000410990 112 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 RNA5SP450-201ENST00000411206 102 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 SNRPGP14-201ENST00000435400 219 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 MIR6845-201ENST00000613182 61 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 AC027279.3-201ENST00000625055 122 ntBASIC1.66□□□□□ -2.14
PDLIM4P50479 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.66□□□□□ -2.14
PDLIM4P50479 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
PDLIM4P50479 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
PDLIM4P50479 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.65□□□□□ -2.14
PDLIM4P50479 MIRLET7C-201ENST00000362160 84 ntBASIC1.65□□□□□ -2.15
PDLIM4P50479 SNORD50B-201ENST00000364995 70 ntBASIC1.65□□□□□ -2.15
PDLIM4P50479 RNU6-1292P-201ENST00000383856 107 ntBASIC1.65□□□□□ -2.15
PDLIM4P50479 Y_RNA.542-201ENST00000384641 111 ntBASIC1.65□□□□□ -2.15
PDLIM4P50479 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
PDLIM4P50479 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
PDLIM4P50479 SNORA12.1-201ENST00000390873 148 ntBASIC1.65□□□□□ -2.15
PDLIM4P50479 SNORA40.18-201ENST00000391200 128 ntBASIC1.65□□□□□ -2.15
PDLIM4P50479 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.65□□□□□ -2.15
PDLIM4P50479 AC092991.1-201ENST00000477176 376 ntBASIC1.65□□□□□ -2.15
PDLIM4P50479 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.65□□□□□ -2.15
PDLIM4P50479 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.65□□□□□ -2.15
PDLIM4P50479 U2.22-201ENST00000636441 106 ntBASIC1.65□□□□□ -2.15
PDLIM4P50479 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.65□□□□□ -2.15
PDLIM4P50479 AC010332.2-201ENST00000613083 1904 ntBASIC1.65□□□□□ -2.15
PDLIM4P50479 RNU6-199P-201ENST00000362954 107 ntBASIC1.64□□□□□ -2.15
PDLIM4P50479 MIR624-201ENST00000385217 97 ntBASIC1.64□□□□□ -2.15
PDLIM4P50479 SNORD72-201ENST00000390994 80 ntBASIC1.64□□□□□ -2.15
PDLIM4P50479 MIR548I2-201ENST00000408348 149 ntBASIC1.64□□□□□ -2.15
PDLIM4P50479 RNU6-257P-201ENST00000410238 98 ntBASIC1.64□□□□□ -2.15
PDLIM4P50479 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.64□□□□□ -2.15
PDLIM4P50479 RNU6-426P-201ENST00000516464 97 ntBASIC1.64□□□□□ -2.15
PDLIM4P50479 RNA5SP481-201ENST00000516814 122 ntBASIC1.64□□□□□ -2.15
PDLIM4P50479 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.64□□□□□ -2.15
PDLIM4P50479 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
PDLIM4P50479 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
PDLIM4P50479 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.63□□□□□ -2.15
PDLIM4P50479 RNU6-1082P-201ENST00000364574 107 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 Y_RNA.265-201ENST00000364677 108 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 snoU2-30.1-201ENST00000365012 70 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 RNU6-442P-201ENST00000383968 104 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 SNORA40-201ENST00000388090 126 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 SNORD37.2-201ENST00000391075 66 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 AL034345.1-201ENST00000407768 123 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 RNU6-588P-201ENST00000410281 105 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 RNU2-7P-201ENST00000410794 178 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 RNA5SP100-201ENST00000410903 110 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 RNA5SP59-201ENST00000410922 110 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 RNA5SP489-201ENST00000410986 109 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.63□□□□□ -2.15
PDLIM4P50479 HMGN2P32-201ENST00000444648 269 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 AC007751.1-201ENST00000529260 376 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.63□□□□□ -2.15
PDLIM4P50479 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.63□□□□□ -2.15
PDLIM4P50479 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
PDLIM4P50479 SNORD61-201ENST00000384252 73 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 RNU6-959P-201ENST00000384671 107 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 SNORA19-201ENST00000384737 128 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 RNU6-1031P-201ENST00000384773 107 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 MIR548A2-201ENST00000384956 97 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 SNRPGP13-201ENST00000442212 177 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.62□□□□□ -2.15
PDLIM4P50479 RPL23AP63-201ENST00000498752 471 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 CYCTP-201ENST00000504253 315 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 SNORD45.4-201ENST00000516629 73 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 RNA5SP437-201ENST00000517249 129 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 AC131055.1-201ENST00000584626 316 ntBASIC1.62□□□□□ -2.15
PDLIM4P50479 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
PDLIM4P50479 SNORD68-201ENST00000363214 84 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 Y_RNA.140-201ENST00000363474 103 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 RNU6-833P-201ENST00000363486 107 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 SNORD14E-201ENST00000364009 85 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 RNU6-268P-201ENST00000364174 107 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 RNU6-424P-201ENST00000384367 105 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 MLLT10P1-201ENST00000418346 262 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 AL158823.1-201ENST00000418441 478 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.61□□□□□ -2.15
PDLIM4P50479 MTND4LP9-201ENST00000427694 174 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 HSPE1P9-201ENST00000440046 311 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 SNORA25.12-201ENST00000516202 82 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms