Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU2-70P-201ENST00000410718 179 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 RPL23AP94-201ENST00000512518 302 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 RNU7-25P-201ENST00000516544 62 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 Y_RNA.714-201ENST00000517065 90 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 MRPS18CP4-201ENST00000535821 231 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 AC015688.6-201ENST00000577737 104 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 AL365434.2-201ENST00000607979 234 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 AC104465.1-201ENST00000611365 139 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 AC015726.2-201ENST00000620112 122 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 RNU6-1123P-201ENST00000362347 106 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 Y_RNA.23-201ENST00000362496 106 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 Y_RNA.270-201ENST00000364693 104 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 RNU6-818P-201ENST00000364837 108 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 RNA5SP126-201ENST00000365092 109 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 SNORD61-201ENST00000384252 73 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 AC015922.2-201ENST00000435593 184 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 Y_RNA.662-201ENST00000516028 97 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.39□□□□□ -2.19
HOXA1P49639 AC007751.1-201ENST00000529260 376 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 FAM106DP-201ENST00000586416 501 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 MIR7974-201ENST00000615835 79 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 AC027279.3-201ENST00000625055 122 ntBASIC1.39□□□□□ -2.19
HOXA1P49639 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.38□□□□□ -2.19
HOXA1P49639 RNU6-199P-201ENST00000362954 107 ntBASIC1.38□□□□□ -2.19
HOXA1P49639 Y_RNA.240-201ENST00000364469 95 ntBASIC1.38□□□□□ -2.19
HOXA1P49639 RNY3P5-201ENST00000384127 102 ntBASIC1.38□□□□□ -2.19
HOXA1P49639 RNU6-886P-201ENST00000384319 105 ntBASIC1.38□□□□□ -2.19
HOXA1P49639 MIR583-201ENST00000384846 75 ntBASIC1.38□□□□□ -2.19
HOXA1P49639 MIR548A2-201ENST00000384956 97 ntBASIC1.38□□□□□ -2.19
HOXA1P49639 MIR548O-201ENST00000408583 114 ntBASIC1.38□□□□□ -2.19
HOXA1P49639 RPL30P13-201ENST00000418873 348 ntBASIC1.38□□□□□ -2.19
HOXA1P49639 RNU6-922P-201ENST00000516753 99 ntBASIC1.38□□□□□ -2.19
HOXA1P49639 AC087685.1-201ENST00000587507 141 ntBASIC1.38□□□□□ -2.19
HOXA1P49639 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
HOXA1P49639 Y_RNA.8-201ENST00000362353 102 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 Y_RNA.66-201ENST00000362862 102 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 Y_RNA.336-201ENST00000365307 109 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 RNU6-643P-201ENST00000384018 107 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 SNORA1-201ENST00000384107 130 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 RNU6-804P-201ENST00000384286 107 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 MIR30A-201ENST00000385092 71 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 SNORA11.2-201ENST00000408318 127 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 snoU13.9-201ENST00000458927 103 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 RNU6-693P-201ENST00000516134 107 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 RNU6-197P-201ENST00000516680 100 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 MIR3658-201ENST00000636291 56 ntBASIC1.37□□□□□ -2.19
HOXA1P49639 MIR302D-201ENST00000362275 68 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 Y_RNA.547-201ENST00000384654 119 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 MIR518F-201ENST00000384973 87 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 MIR9-3-201ENST00000385084 90 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 RNU6-1135P-201ENST00000411083 103 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 HMGN2P32-201ENST00000444648 269 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 RPS29P11-201ENST00000496507 171 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 RNU1-41P-201ENST00000516161 162 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 RNU1-48P-201ENST00000516400 162 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 SNORA18.7-201ENST00000516910 131 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 RNU6-365P-201ENST00000517113 106 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 RNU7-181P-201ENST00000517234 74 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 MIR4431-201ENST00000579990 94 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 MIR3945-201ENST00000581853 98 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 AC098479.1-201ENST00000609225 154 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 AC006441.5-201ENST00000612680 209 ntBASIC1.36□□□□□ -2.19
HOXA1P49639 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
HOXA1P49639 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
HOXA1P49639 SNORD1A-201ENST00000364968 72 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 RNU6-1130P-201ENST00000365434 107 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 RNU6-209P-201ENST00000384118 107 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 MIR570-201ENST00000384917 97 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 MIR150-201ENST00000385048 84 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 SNORA79-201ENST00000408376 140 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 RNU4-43P-201ENST00000410628 137 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 RNU2-55P-201ENST00000411146 174 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 SNRPGP13-201ENST00000442212 177 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 SNORA44.1-201ENST00000517031 108 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 MIR4662B-201ENST00000579498 81 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 AC084768.2-201ENST00000622736 221 ntBASIC1.35□□□□□ -2.19
HOXA1P49639 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.35□□□□□ -2.19
HOXA1P49639 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
HOXA1P49639 RNU6-312P-201ENST00000364629 107 ntBASIC1.34□□□□□ -2.19
HOXA1P49639 SNORD38C-201ENST00000384381 69 ntBASIC1.34□□□□□ -2.19
HOXA1P49639 RNU6-768P-201ENST00000384683 107 ntBASIC1.34□□□□□ -2.19
HOXA1P49639 MIR452-201ENST00000385020 85 ntBASIC1.34□□□□□ -2.19
HOXA1P49639 SNORD28B-201ENST00000390993 75 ntBASIC1.34□□□□□ -2.19
HOXA1P49639 MTND5P41-201ENST00000517498 206 ntBASIC1.34□□□□□ -2.19
HOXA1P49639 MIR3129-201ENST00000581095 76 ntBASIC1.34□□□□□ -2.19
HOXA1P49639 AC097639.2-201ENST00000603159 172 ntBASIC1.34□□□□□ -2.19
HOXA1P49639 AC021753.1-201ENST00000635724 168 ntBASIC1.34□□□□□ -2.19
HOXA1P49639 MIR376A2-201ENST00000636782 80 ntBASIC1.34□□□□□ -2.19
HOXA1P49639 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
HOXA1P49639 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
HOXA1P49639 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.33□□□□□ -2.2
HOXA1P49639 RNY1P11-201ENST00000363759 113 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 RNU4-84P-201ENST00000364200 139 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 RNU6-978P-201ENST00000364371 103 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 Y_RNA.494-201ENST00000384432 111 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 Y_RNA.521-201ENST00000384560 114 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 Y_RNA.555-201ENST00000384673 110 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 SNORD41-201ENST00000386967 70 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 162 ms