Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 SCARNA15.3-201ENST00000626315 122 ntBASIC1.65□□□□□ -2.15
RFX2P48378 SCARNA4.1-201ENST00000628597 123 ntBASIC1.65□□□□□ -2.15
RFX2P48378 RNU6-888P-201ENST00000363010 101 ntBASIC1.64□□□□□ -2.15
RFX2P48378 Y_RNA.242-201ENST00000364473 110 ntBASIC1.64□□□□□ -2.15
RFX2P48378 MIR518F-201ENST00000384973 87 ntBASIC1.64□□□□□ -2.15
RFX2P48378 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.64□□□□□ -2.15
RFX2P48378 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.64□□□□□ -2.15
RFX2P48378 HMGN2P32-201ENST00000444648 269 ntBASIC1.64□□□□□ -2.15
RFX2P48378 AC093850.1-201ENST00000454121 251 ntBASIC1.64□□□□□ -2.15
RFX2P48378 AC099513.1-201ENST00000490423 301 ntBASIC1.64□□□□□ -2.15
RFX2P48378 RNU7-12P-201ENST00000516030 62 ntBASIC1.64□□□□□ -2.15
RFX2P48378 SNORA18.4-201ENST00000516440 124 ntBASIC1.64□□□□□ -2.15
RFX2P48378 AC078899.2-201ENST00000595282 212 ntBASIC1.64□□□□□ -2.15
RFX2P48378 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.64□□□□□ -2.15
RFX2P48378 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
RFX2P48378 AL136360.1-201ENST00000503377 1900 ntBASIC1.64□□□□□ -2.15
RFX2P48378 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
RFX2P48378 Y_RNA.251-201ENST00000364551 99 ntBASIC1.63□□□□□ -2.15
RFX2P48378 RNA5SP363-201ENST00000365072 115 ntBASIC1.63□□□□□ -2.15
RFX2P48378 Y_RNA.336-201ENST00000365307 109 ntBASIC1.63□□□□□ -2.15
RFX2P48378 SNORD24-201ENST00000383884 75 ntBASIC1.63□□□□□ -2.15
RFX2P48378 Y_RNA.586-201ENST00000391146 98 ntBASIC1.63□□□□□ -2.15
RFX2P48378 AL023284.1-201ENST00000403956 276 ntBASIC1.63□□□□□ -2.15
RFX2P48378 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.63□□□□□ -2.15
RFX2P48378 AL365205.2-201ENST00000594586 68 ntBASIC1.63□□□□□ -2.15
RFX2P48378 AL627230.6-201ENST00000611129 280 ntBASIC1.63□□□□□ -2.15
RFX2P48378 AC006441.5-201ENST00000612680 209 ntBASIC1.63□□□□□ -2.15
RFX2P48378 AC015726.2-201ENST00000620112 122 ntBASIC1.63□□□□□ -2.15
RFX2P48378 SNORA16.1-201ENST00000364597 132 ntBASIC1.62□□□□□ -2.15
RFX2P48378 Y_RNA.542-201ENST00000384641 111 ntBASIC1.62□□□□□ -2.15
RFX2P48378 MIR634-201ENST00000385208 97 ntBASIC1.62□□□□□ -2.15
RFX2P48378 Y_RNA.584-201ENST00000391090 114 ntBASIC1.62□□□□□ -2.15
RFX2P48378 MIR891A-201ENST00000401237 79 ntBASIC1.62□□□□□ -2.15
RFX2P48378 AL606753.1-201ENST00000427435 87 ntBASIC1.62□□□□□ -2.15
RFX2P48378 MTND4LP9-201ENST00000427694 174 ntBASIC1.62□□□□□ -2.15
RFX2P48378 AF228730.3-201ENST00000436691 102 ntBASIC1.62□□□□□ -2.15
RFX2P48378 MIR4778-201ENST00000577635 80 ntBASIC1.62□□□□□ -2.15
RFX2P48378 AC027279.3-201ENST00000625055 122 ntBASIC1.62□□□□□ -2.15
RFX2P48378 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
RFX2P48378 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
RFX2P48378 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.61□□□□□ -2.15
RFX2P48378 U8.1-201ENST00000362843 134 ntBASIC1.61□□□□□ -2.15
RFX2P48378 SNORA67.3-201ENST00000384366 140 ntBASIC1.61□□□□□ -2.15
RFX2P48378 Y_RNA.547-201ENST00000384654 119 ntBASIC1.61□□□□□ -2.15
RFX2P48378 SNORA40-201ENST00000388090 126 ntBASIC1.61□□□□□ -2.15
RFX2P48378 SNORD77.3-201ENST00000391113 65 ntBASIC1.61□□□□□ -2.15
RFX2P48378 RNU4-53P-201ENST00000410828 140 ntBASIC1.61□□□□□ -2.15
RFX2P48378 RNA5SP127-201ENST00000411051 133 ntBASIC1.61□□□□□ -2.15
RFX2P48378 RPL31P63-201ENST00000422565 375 ntBASIC1.61□□□□□ -2.15
RFX2P48378 PGBD4P5-201ENST00000445958 426 ntBASIC1.61□□□□□ -2.15
RFX2P48378 DEFB122-202ENST00000569013 197 ntBASIC1.61□□□□□ -2.15
RFX2P48378 MIR4287-201ENST00000579398 78 ntBASIC1.61□□□□□ -2.15
RFX2P48378 MIR3162-201ENST00000581818 82 ntBASIC1.61□□□□□ -2.15
RFX2P48378 AC131055.1-201ENST00000584626 316 ntBASIC1.61□□□□□ -2.15
RFX2P48378 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.61□□□□□ -2.15
RFX2P48378 RNU6-833P-201ENST00000363486 107 ntBASIC1.6□□□□□ -2.15
RFX2P48378 RNU6-915P-201ENST00000364943 103 ntBASIC1.6□□□□□ -2.15
RFX2P48378 RNU6-203P-201ENST00000384038 104 ntBASIC1.6□□□□□ -2.15
RFX2P48378 RNU6-439P-201ENST00000384188 106 ntBASIC1.6□□□□□ -2.15
RFX2P48378 MIR516B2-201ENST00000385190 85 ntBASIC1.6□□□□□ -2.15
RFX2P48378 MIR624-201ENST00000385217 97 ntBASIC1.6□□□□□ -2.15
RFX2P48378 AC015922.2-201ENST00000435593 184 ntBASIC1.6□□□□□ -2.15
RFX2P48378 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.6□□□□□ -2.15
RFX2P48378 Y_RNA.686-201ENST00000516548 134 ntBASIC1.6□□□□□ -2.15
RFX2P48378 RNU6-971P-201ENST00000516920 106 ntBASIC1.6□□□□□ -2.15
RFX2P48378 MIR4419B-201ENST00000577260 68 ntBASIC1.6□□□□□ -2.15
RFX2P48378 SNORD3E-202ENST00000627253 216 ntBASIC1.6□□□□□ -2.15
RFX2P48378 MIR376A2-201ENST00000636782 80 ntBASIC1.6□□□□□ -2.15
RFX2P48378 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.59□□□□□ -2.15
RFX2P48378 SNORD115-28-201ENST00000363931 81 ntBASIC1.59□□□□□ -2.15
RFX2P48378 RNU6-81P-201ENST00000365608 104 ntBASIC1.59□□□□□ -2.15
RFX2P48378 SNORD38C-201ENST00000384381 69 ntBASIC1.59□□□□□ -2.15
RFX2P48378 MIR660-201ENST00000385235 97 ntBASIC1.59□□□□□ -2.15
RFX2P48378 RNU6-360P-201ENST00000390944 104 ntBASIC1.59□□□□□ -2.15
RFX2P48378 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.59□□□□□ -2.15
RFX2P48378 AP001328.1-201ENST00000528550 176 ntBASIC1.59□□□□□ -2.15
RFX2P48378 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.59□□□□□ -2.15
RFX2P48378 AL773524.1-201ENST00000614065 229 ntBASIC1.59□□□□□ -2.15
RFX2P48378 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.59□□□□□ -2.15
RFX2P48378 AL513423.1-201ENST00000621695 132 ntBASIC1.59□□□□□ -2.15
RFX2P48378 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
RFX2P48378 Y_RNA.52-201ENST00000362760 96 ntBASIC1.58□□□□□ -2.16
RFX2P48378 RNU6-508P-201ENST00000363231 103 ntBASIC1.58□□□□□ -2.16
RFX2P48378 SNORA64-201ENST00000384674 134 ntBASIC1.58□□□□□ -2.16
RFX2P48378 RNA5SP212-201ENST00000391223 107 ntBASIC1.58□□□□□ -2.16
RFX2P48378 AL445646.1-201ENST00000431784 216 ntBASIC1.58□□□□□ -2.16
RFX2P48378 RNU6-1211P-201ENST00000459179 105 ntBASIC1.58□□□□□ -2.16
RFX2P48378 SNORD36C-201ENST00000516733 66 ntBASIC1.58□□□□□ -2.16
RFX2P48378 RNU2-60P-201ENST00000517290 128 ntBASIC1.58□□□□□ -2.16
RFX2P48378 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.58□□□□□ -2.16
RFX2P48378 AC011603.4-201ENST00000611325 277 ntBASIC1.58□□□□□ -2.16
RFX2P48378 AC095038.3-201ENST00000634439 195 ntBASIC1.58□□□□□ -2.16
RFX2P48378 AC008555.8-201ENST00000623602 2168 ntBASIC1.58□□□□□ -2.16
RFX2P48378 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
RFX2P48378 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
RFX2P48378 Y_RNA.37-201ENST00000362606 108 ntBASIC1.57□□□□□ -2.16
RFX2P48378 Y_RNA.294-201ENST00000364916 102 ntBASIC1.57□□□□□ -2.16
RFX2P48378 RNU6-959P-201ENST00000384671 107 ntBASIC1.57□□□□□ -2.16
RFX2P48378 RN7SKP192-201ENST00000411291 327 ntBASIC1.57□□□□□ -2.16
RFX2P48378 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms