Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNA5SP496-201ENST00000391240 109 ntBASIC0.93□□□□□ -2.26
CDX1P47902 AL603910.2-201ENST00000407268 136 ntBASIC0.93□□□□□ -2.26
CDX1P47902 RNA5SP247-201ENST00000411181 105 ntBASIC0.93□□□□□ -2.26
CDX1P47902 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.93□□□□□ -2.26
CDX1P47902 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.93□□□□□ -2.26
CDX1P47902 MIR4661-201ENST00000582720 75 ntBASIC0.93□□□□□ -2.26
CDX1P47902 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.93□□□□□ -2.26
CDX1P47902 AL049861.1-201ENST00000603130 150 ntBASIC0.93□□□□□ -2.26
CDX1P47902 AC006441.5-201ENST00000612680 209 ntBASIC0.93□□□□□ -2.26
CDX1P47902 uc_338.4-201ENST00000616635 176 ntBASIC0.93□□□□□ -2.26
CDX1P47902 SEPT14P17-201ENST00000617978 177 ntBASIC0.93□□□□□ -2.26
CDX1P47902 AC091895.1-201ENST00000624494 256 ntBASIC0.93□□□□□ -2.26
CDX1P47902 snoU18.1-201ENST00000629629 71 ntBASIC0.93□□□□□ -2.26
CDX1P47902 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
CDX1P47902 SNORA1.2-201ENST00000365189 134 ntBASIC0.92□□□□□ -2.26
CDX1P47902 RPS29P29-201ENST00000456396 171 ntBASIC0.92□□□□□ -2.26
CDX1P47902 MTND5P22-201ENST00000458380 195 ntBASIC0.92□□□□□ -2.26
CDX1P47902 SERF1AP1-201ENST00000514575 187 ntBASIC0.92□□□□□ -2.26
CDX1P47902 RNU6-570P-201ENST00000517051 105 ntBASIC0.92□□□□□ -2.26
CDX1P47902 RNU7-181P-201ENST00000517234 74 ntBASIC0.92□□□□□ -2.26
CDX1P47902 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
CDX1P47902 Y_RNA.370-201ENST00000365589 108 ntBASIC0.91□□□□□ -2.26
CDX1P47902 MIR570-201ENST00000384917 97 ntBASIC0.91□□□□□ -2.26
CDX1P47902 MIR1185-1-201ENST00000408598 86 ntBASIC0.91□□□□□ -2.26
CDX1P47902 RNU6-1338P-201ENST00000516328 91 ntBASIC0.91□□□□□ -2.26
CDX1P47902 RNU7-149P-201ENST00000516739 59 ntBASIC0.91□□□□□ -2.26
CDX1P47902 AP003716.2-201ENST00000528260 108 ntBASIC0.91□□□□□ -2.26
CDX1P47902 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.91□□□□□ -2.26
CDX1P47902 AC023827.1-201ENST00000569247 97 ntBASIC0.91□□□□□ -2.26
CDX1P47902 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.91□□□□□ -2.26
CDX1P47902 MIR8070-201ENST00000616510 88 ntBASIC0.91□□□□□ -2.26
CDX1P47902 AC022140.2-201ENST00000623500 188 ntBASIC0.91□□□□□ -2.26
CDX1P47902 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.91□□□□□ -2.26
CDX1P47902 AL391516.1-201ENST00000554380 2449 ntBASIC0.9□□□□□ -2.26
CDX1P47902 RNU6-53P-201ENST00000365367 106 ntBASIC0.9□□□□□ -2.27
CDX1P47902 Y_RNA.422-201ENST00000384054 114 ntBASIC0.9□□□□□ -2.27
CDX1P47902 RNU6-713P-201ENST00000384761 107 ntBASIC0.9□□□□□ -2.27
CDX1P47902 PDCD5P2-201ENST00000507570 312 ntBASIC0.9□□□□□ -2.27
CDX1P47902 SCARNA8-201ENST00000515924 131 ntBASIC0.9□□□□□ -2.27
CDX1P47902 DEFB108E-201ENST00000524692 240 ntBASIC0.9□□□□□ -2.27
CDX1P47902 AC006006.1-201ENST00000603082 144 ntBASIC0.9□□□□□ -2.27
CDX1P47902 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
CDX1P47902 Y_RNA.217-201ENST00000364214 105 ntBASIC0.89□□□□□ -2.27
CDX1P47902 SNORA51.10-201ENST00000384418 136 ntBASIC0.89□□□□□ -2.27
CDX1P47902 RNU6-1203P-201ENST00000410703 110 ntBASIC0.89□□□□□ -2.27
CDX1P47902 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.89□□□□□ -2.27
CDX1P47902 Y_RNA.641-201ENST00000459414 105 ntBASIC0.89□□□□□ -2.27
CDX1P47902 AC087343.1-201ENST00000477341 475 ntBASIC0.89□□□□□ -2.27
CDX1P47902 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.89□□□□□ -2.27
CDX1P47902 RNU11-2P-201ENST00000516898 142 ntBASIC0.89□□□□□ -2.27
CDX1P47902 MIR4295-201ENST00000585286 85 ntBASIC0.89□□□□□ -2.27
CDX1P47902 Y_RNA.802-201ENST00000614892 130 ntBASIC0.89□□□□□ -2.27
CDX1P47902 AL442644.1-201ENST00000454390 3105 ntBASIC0.89□□□□□ -2.27
CDX1P47902 UBE2WP1-201ENST00000362030 340 ntBASIC0.88□□□□□ -2.27
CDX1P47902 RNU6-1187P-201ENST00000364771 110 ntBASIC0.88□□□□□ -2.27
CDX1P47902 SNORA25.9-201ENST00000365087 128 ntBASIC0.88□□□□□ -2.27
CDX1P47902 RNU6-1109P-201ENST00000391187 107 ntBASIC0.88□□□□□ -2.27
CDX1P47902 FABP5P4-201ENST00000437203 171 ntBASIC0.88□□□□□ -2.27
CDX1P47902 AC107297.1-201ENST00000459991 176 ntBASIC0.88□□□□□ -2.27
CDX1P47902 COX6CP14-201ENST00000469580 174 ntBASIC0.88□□□□□ -2.27
CDX1P47902 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.88□□□□□ -2.27
CDX1P47902 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.88□□□□□ -2.27
CDX1P47902 AL008718.3-201ENST00000610217 321 ntBASIC0.88□□□□□ -2.27
CDX1P47902 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.88□□□□□ -2.27
CDX1P47902 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
CDX1P47902 Y_RNA.226-201ENST00000364337 114 ntBASIC0.87□□□□□ -2.27
CDX1P47902 RNU4-10P-201ENST00000364383 140 ntBASIC0.87□□□□□ -2.27
CDX1P47902 RNU6-1289P-201ENST00000384431 106 ntBASIC0.87□□□□□ -2.27
CDX1P47902 Y_RNA.537-201ENST00000384626 109 ntBASIC0.87□□□□□ -2.27
CDX1P47902 MIR499A-201ENST00000384903 122 ntBASIC0.87□□□□□ -2.27
CDX1P47902 MIR526A2-201ENST00000390198 65 ntBASIC0.87□□□□□ -2.27
CDX1P47902 Y_RNA.587-201ENST00000391210 103 ntBASIC0.87□□□□□ -2.27
CDX1P47902 MIR548O-201ENST00000408583 114 ntBASIC0.87□□□□□ -2.27
CDX1P47902 TRBVB-201ENST00000477100 408 ntBASIC0.87□□□□□ -2.27
CDX1P47902 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.87□□□□□ -2.27
CDX1P47902 RNU4-57P-201ENST00000515980 135 ntBASIC0.87□□□□□ -2.27
CDX1P47902 RNU7-25P-201ENST00000516544 62 ntBASIC0.87□□□□□ -2.27
CDX1P47902 RNU6-635P-201ENST00000516651 102 ntBASIC0.87□□□□□ -2.27
CDX1P47902 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.87□□□□□ -2.27
CDX1P47902 AC109810.1-201ENST00000534066 224 ntBASIC0.87□□□□□ -2.27
CDX1P47902 AC131055.1-201ENST00000584626 316 ntBASIC0.87□□□□□ -2.27
CDX1P47902 AL021707.8-201ENST00000609428 183 ntBASIC0.87□□□□□ -2.27
CDX1P47902 AC068700.1-201ENST00000565862 3754 ntBASIC0.86□□□□□ -2.27
CDX1P47902 Y_RNA.24-201ENST00000362508 103 ntBASIC0.86□□□□□ -2.27
CDX1P47902 RNU6-238P-201ENST00000363313 106 ntBASIC0.86□□□□□ -2.27
CDX1P47902 RNU6-1138P-201ENST00000365359 106 ntBASIC0.86□□□□□ -2.27
CDX1P47902 RNU6-211P-201ENST00000384047 107 ntBASIC0.86□□□□□ -2.27
CDX1P47902 Y_RNA.547-201ENST00000384654 119 ntBASIC0.86□□□□□ -2.27
CDX1P47902 SNORA8.3-201ENST00000384679 139 ntBASIC0.86□□□□□ -2.27
CDX1P47902 MIR1276-201ENST00000408707 83 ntBASIC0.86□□□□□ -2.27
CDX1P47902 RNU6-847P-201ENST00000411115 108 ntBASIC0.86□□□□□ -2.27
CDX1P47902 Y_RNA.666-201ENST00000516187 112 ntBASIC0.86□□□□□ -2.27
CDX1P47902 RNA5SP102-201ENST00000516865 106 ntBASIC0.86□□□□□ -2.27
CDX1P47902 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.86□□□□□ -2.27
CDX1P47902 AP003072.1-201ENST00000531740 145 ntBASIC0.86□□□□□ -2.27
CDX1P47902 MIR4662B-201ENST00000579498 81 ntBASIC0.86□□□□□ -2.27
CDX1P47902 AC012433.1-201ENST00000588916 398 ntBASIC0.86□□□□□ -2.27
CDX1P47902 AC006504.6-201ENST00000590142 199 ntBASIC0.86□□□□□ -2.27
CDX1P47902 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.86□□□□□ -2.27
CDX1P47902 AL020996.3-201ENST00000606617 222 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 179.7 ms