Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MIR4299-201ENST00000577899 72 ntBASIC2.16□□□□□ -2.06
CBX4O00257 MIR4713-201ENST00000582691 75 ntBASIC2.16□□□□□ -2.06
CBX4O00257 MIR219B-201ENST00000637023 88 ntBASIC2.16□□□□□ -2.06
CBX4O00257 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.16□□□□□ -2.06
CBX4O00257 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CBX4O00257 ZNF720P1-201ENST00000562403 1939 ntBASIC2.15□□□□□ -2.06
CBX4O00257 RNU6-661P-201ENST00000362409 107 ntBASIC2.15□□□□□ -2.07
CBX4O00257 Y_RNA.542-201ENST00000384641 111 ntBASIC2.15□□□□□ -2.07
CBX4O00257 SNRPGP14-201ENST00000435400 219 ntBASIC2.15□□□□□ -2.07
CBX4O00257 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.15□□□□□ -2.07
CBX4O00257 AC022254.1-201ENST00000567857 235 ntBASIC2.15□□□□□ -2.07
CBX4O00257 MIR548X2-201ENST00000579776 100 ntBASIC2.15□□□□□ -2.07
CBX4O00257 MIR6895-201ENST00000613497 78 ntBASIC2.15□□□□□ -2.07
CBX4O00257 AC015726.2-201ENST00000620112 122 ntBASIC2.15□□□□□ -2.07
CBX4O00257 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CBX4O00257 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CBX4O00257 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CBX4O00257 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CBX4O00257 Y_RNA.140-201ENST00000363474 103 ntBASIC2.14□□□□□ -2.07
CBX4O00257 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
CBX4O00257 RNA5SP247-201ENST00000411181 105 ntBASIC2.14□□□□□ -2.07
CBX4O00257 JTBP1-201ENST00000441314 247 ntBASIC2.14□□□□□ -2.07
CBX4O00257 RNA5SP458-201ENST00000516188 119 ntBASIC2.14□□□□□ -2.07
CBX4O00257 SNORA18.4-201ENST00000516440 124 ntBASIC2.14□□□□□ -2.07
CBX4O00257 AC007751.1-201ENST00000529260 376 ntBASIC2.14□□□□□ -2.07
CBX4O00257 MIR4778-201ENST00000577635 80 ntBASIC2.14□□□□□ -2.07
CBX4O00257 AL365205.2-201ENST00000594586 68 ntBASIC2.14□□□□□ -2.07
CBX4O00257 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.14□□□□□ -2.07
CBX4O00257 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.14□□□□□ -2.07
CBX4O00257 RNU6-818P-201ENST00000364837 108 ntBASIC2.13□□□□□ -2.07
CBX4O00257 RNU6-588P-201ENST00000410281 105 ntBASIC2.13□□□□□ -2.07
CBX4O00257 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.13□□□□□ -2.07
CBX4O00257 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.13□□□□□ -2.07
CBX4O00257 AC015922.2-201ENST00000435593 184 ntBASIC2.13□□□□□ -2.07
CBX4O00257 AC104435.1-201ENST00000483483 166 ntBASIC2.13□□□□□ -2.07
CBX4O00257 RNU7-25P-201ENST00000516544 62 ntBASIC2.13□□□□□ -2.07
CBX4O00257 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
CBX4O00257 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
CBX4O00257 RNU6-203P-201ENST00000384038 104 ntBASIC2.12□□□□□ -2.07
CBX4O00257 RNU6-187P-201ENST00000384139 106 ntBASIC2.12□□□□□ -2.07
CBX4O00257 MIR613-201ENST00000385248 95 ntBASIC2.12□□□□□ -2.07
CBX4O00257 MIR1267-201ENST00000408723 78 ntBASIC2.12□□□□□ -2.07
CBX4O00257 RNA5SP127-201ENST00000411051 133 ntBASIC2.12□□□□□ -2.07
CBX4O00257 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CBX4O00257 AL392103.1-201ENST00000447000 198 ntBASIC2.12□□□□□ -2.07
CBX4O00257 AC093850.1-201ENST00000454121 251 ntBASIC2.12□□□□□ -2.07
CBX4O00257 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.12□□□□□ -2.07
CBX4O00257 MIR3129-201ENST00000581095 76 ntBASIC2.12□□□□□ -2.07
CBX4O00257 AC134878.1-201ENST00000619901 243 ntBASIC2.12□□□□□ -2.07
CBX4O00257 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CBX4O00257 RNU6-1082P-201ENST00000364574 107 ntBASIC2.11□□□□□ -2.07
CBX4O00257 RNU6-439P-201ENST00000384188 106 ntBASIC2.11□□□□□ -2.07
CBX4O00257 Y_RNA.547-201ENST00000384654 119 ntBASIC2.11□□□□□ -2.07
CBX4O00257 MIR518F-201ENST00000384973 87 ntBASIC2.11□□□□□ -2.07
CBX4O00257 RNU4-61P-201ENST00000411243 107 ntBASIC2.11□□□□□ -2.07
CBX4O00257 AC004965.1-201ENST00000413033 213 ntBASIC2.11□□□□□ -2.07
CBX4O00257 CYCSP49-201ENST00000420810 319 ntBASIC2.11□□□□□ -2.07
CBX4O00257 RPL23AP42-201ENST00000471152 471 ntBASIC2.11□□□□□ -2.07
CBX4O00257 SNORA25.12-201ENST00000516202 82 ntBASIC2.11□□□□□ -2.07
CBX4O00257 MIR6840-201ENST00000611937 71 ntBASIC2.11□□□□□ -2.07
CBX4O00257 Y_RNA.783-201ENST00000613546 102 ntBASIC2.11□□□□□ -2.07
CBX4O00257 SNORD115-28-201ENST00000363931 81 ntBASIC2.1□□□□□ -2.07
CBX4O00257 RNU6-1292P-201ENST00000383856 107 ntBASIC2.1□□□□□ -2.07
CBX4O00257 SNORA1-201ENST00000384107 130 ntBASIC2.1□□□□□ -2.07
CBX4O00257 MIR548A2-201ENST00000384956 97 ntBASIC2.1□□□□□ -2.07
CBX4O00257 MIR136-201ENST00000385207 82 ntBASIC2.1□□□□□ -2.07
CBX4O00257 MIR624-201ENST00000385217 97 ntBASIC2.1□□□□□ -2.07
CBX4O00257 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.1□□□□□ -2.07
CBX4O00257 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
CBX4O00257 AL445646.1-201ENST00000431784 216 ntBASIC2.1□□□□□ -2.07
CBX4O00257 RNA5SP233-201ENST00000459153 113 ntBASIC2.1□□□□□ -2.07
CBX4O00257 AC079804.2-201ENST00000490376 200 ntBASIC2.1□□□□□ -2.07
CBX4O00257 RNU6-295P-201ENST00000516901 104 ntBASIC2.1□□□□□ -2.07
CBX4O00257 AL627230.6-201ENST00000611129 280 ntBASIC2.1□□□□□ -2.07
CBX4O00257 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CBX4O00257 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CBX4O00257 AL596028.1-201ENST00000326971 197 ntBASIC2.09□□□□□ -2.07
CBX4O00257 SNORD50.2-201ENST00000365465 70 ntBASIC2.09□□□□□ -2.07
CBX4O00257 MIR569-201ENST00000385228 96 ntBASIC2.09□□□□□ -2.07
CBX4O00257 U8.13-201ENST00000390842 128 ntBASIC2.09□□□□□ -2.07
CBX4O00257 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.09□□□□□ -2.07
CBX4O00257 RNU6-830P-201ENST00000516353 107 ntBASIC2.09□□□□□ -2.07
CBX4O00257 MIR5694-201ENST00000581190 76 ntBASIC2.09□□□□□ -2.07
CBX4O00257 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.09□□□□□ -2.07
CBX4O00257 MIR5002-201ENST00000584713 97 ntBASIC2.09□□□□□ -2.07
CBX4O00257 MIR8074-201ENST00000615081 81 ntBASIC2.09□□□□□ -2.07
CBX4O00257 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.09□□□□□ -2.08
CBX4O00257 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CBX4O00257 Y_RNA.164-201ENST00000363709 102 ntBASIC2.08□□□□□ -2.08
CBX4O00257 RNU6-1336P-201ENST00000383886 109 ntBASIC2.08□□□□□ -2.08
CBX4O00257 Y_RNA.410-201ENST00000383992 113 ntBASIC2.08□□□□□ -2.08
CBX4O00257 MIR194-1-201ENST00000384892 85 ntBASIC2.08□□□□□ -2.08
CBX4O00257 MIR516B2-201ENST00000385190 85 ntBASIC2.08□□□□□ -2.08
CBX4O00257 Y_RNA.584-201ENST00000391090 114 ntBASIC2.08□□□□□ -2.08
CBX4O00257 RNU6-426P-201ENST00000516464 97 ntBASIC2.08□□□□□ -2.08
CBX4O00257 SNORA44.1-201ENST00000517031 108 ntBASIC2.08□□□□□ -2.08
CBX4O00257 AP001485.1-201ENST00000604799 199 ntBASIC2.08□□□□□ -2.08
CBX4O00257 MIR6845-201ENST00000613182 61 ntBASIC2.08□□□□□ -2.08
CBX4O00257 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.08□□□□□ -2.08
CBX4O00257 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms