Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SNORA74D-201ENST00000516404 141 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 RNU7-28P-201ENST00000516759 62 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 RNA5SP380-201ENST00000517190 98 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 U6.105-201ENST00000637379 88 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 SNORA7.4-201ENST00000384249 137 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 SNORA27-201ENST00000384323 126 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 RNU6-163P-201ENST00000384396 106 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 MIR183-201ENST00000384958 110 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 MIR605-201ENST00000385078 83 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 AL627390.1-201ENST00000396055 340 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 SNORA11.4-201ENST00000408823 129 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 AL022718.1-201ENST00000412004 84 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 STAG3L5P-204ENST00000443759 179 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 RN7SL75P-201ENST00000461926 281 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 SNORA31.4-201ENST00000516049 129 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 AC004812.1-201ENST00000540773 146 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 IGLL4P-201ENST00000614590 133 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 AC064859.1-201ENST00000624741 174 ntBASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
HIF3AQ9Y2N7 RNU6-170P-201ENST00000362832 104 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 RNU4-67P-201ENST00000364569 141 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 SNORA4.2-201ENST00000365313 147 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 Y_RNA.360-201ENST00000365512 102 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 Y_RNA.494-201ENST00000384432 111 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 RNVU1-14-201ENST00000384770 164 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 MIR1255A-201ENST00000408338 113 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 RNU6-733P-201ENST00000410759 104 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 RNU4-47P-201ENST00000410876 114 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 AL035398.1-201ENST00000430869 322 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 RNU7-45P-201ENST00000459460 63 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 RPS23P4-201ENST00000487908 423 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 RNA5SP385-201ENST00000515947 110 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 MIR4694-201ENST00000578534 80 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 AP006437.1-201ENST00000641440 3685 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 AC093831.2-201ENST00000624393 3427 ntBASIC2.79□□□□□ -1.96
HIF3AQ9Y2N7 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 Y_RNA.10-201ENST00000362371 110 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 RNU6-832P-201ENST00000363319 107 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 SNORA38-201ENST00000363946 132 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 RNU6-409P-201ENST00000384114 104 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 SNORA9-201ENST00000384215 133 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 SNORD38C-201ENST00000384381 69 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 SNORA7.5-201ENST00000410672 110 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 AC004941.2-201ENST00000427009 228 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 RN7SL863P-201ENST00000462370 296 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 AC090821.2-201ENST00000523552 176 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 MIR5195-201ENST00000583555 115 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 MIR4506-201ENST00000584693 77 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 MIR7975-201ENST00000619350 68 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 MIR622-201ENST00000638396 96 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 AC091304.10-201ENST00000641554 121 ntBASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HIF3AQ9Y2N7 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.97
HIF3AQ9Y2N7 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-661P-201ENST00000362409 107 ntBASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 SNORD15B-201ENST00000384714 146 ntBASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 RNA5SP274-201ENST00000410484 108 ntBASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 AC005326.1-201ENST00000429197 123 ntBASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 RPL39P39-201ENST00000455840 151 ntBASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 RN7SL20P-201ENST00000488827 297 ntBASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 AC021613.1-201ENST00000623880 111 ntBASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.77□□□□□ -1.97
HIF3AQ9Y2N7 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-363P-201ENST00000362895 105 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 SNORD115-19-201ENST00000363098 82 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 SNORD115-3-201ENST00000363100 82 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 SNORD115-18-201ENST00000363293 82 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 SNORD115-17-201ENST00000364612 82 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 MIR29C-201ENST00000385231 88 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 Z92545.1-201ENST00000411782 234 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 BTF3P4-201ENST00000418852 495 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-998P-201ENST00000515894 101 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 RNU7-181P-201ENST00000517234 74 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 MIR3200-201ENST00000580767 85 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 AC005786.1-201ENST00000588553 154 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 AC022513.1-201ENST00000624512 117 ntBASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HIF3AQ9Y2N7 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 AC092881.1-201ENST00000638218 2733 ntBASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 AC073325.2-201ENST00000339545 159 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 179.8 ms