Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS9D1Q9Y2B5 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 AC091152.2-201ENST00000591628 2569 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 AC007336.1-201ENST00000576365 3828 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 RNU5F-1-201ENST00000362507 117 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 Y_RNA.532-201ENST00000384590 113 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 RNU6-540P-201ENST00000384622 101 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 MIR592-201ENST00000384959 97 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 RNU6-587P-201ENST00000391282 106 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 SNORA57.3-201ENST00000411095 141 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 RNU6-667P-201ENST00000517186 102 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 AL512598.1-201ENST00000610158 273 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 MIR8066-201ENST00000617280 78 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 U7.8-201ENST00000619968 63 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 AP001362.1-201ENST00000625165 124 ntBASIC3.66□□□□□ -1.82
VPS9D1Q9Y2B5 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.65□□□□□ -1.82
VPS9D1Q9Y2B5 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
VPS9D1Q9Y2B5 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
VPS9D1Q9Y2B5 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
VPS9D1Q9Y2B5 Y_RNA.99-201ENST00000363138 105 ntBASIC3.65□□□□□ -1.83
VPS9D1Q9Y2B5 MIR670-201ENST00000390142 98 ntBASIC3.65□□□□□ -1.83
VPS9D1Q9Y2B5 HMGN1P33-201ENST00000432945 451 ntBASIC3.65□□□□□ -1.83
VPS9D1Q9Y2B5 RNU6-579P-201ENST00000516879 102 ntBASIC3.65□□□□□ -1.83
VPS9D1Q9Y2B5 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS9D1Q9Y2B5 MIR5685-201ENST00000579080 79 ntBASIC3.65□□□□□ -1.83
VPS9D1Q9Y2B5 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS9D1Q9Y2B5 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 RNU6-160P-201ENST00000384591 107 ntBASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 MIR554-201ENST00000384874 96 ntBASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 MIR516B2-201ENST00000385190 85 ntBASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS9D1Q9Y2B5 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 RNA5SP124-201ENST00000362739 110 ntBASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 Y_RNA.354-201ENST00000365448 111 ntBASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 MIR635-201ENST00000384830 98 ntBASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 MIR561-201ENST00000385216 97 ntBASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 RNU6-141P-201ENST00000410499 105 ntBASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 AP003355.3-201ENST00000623465 114 ntBASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS9D1Q9Y2B5 AP000648.3-201ENST00000623539 4507 ntBASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 RNU6-283P-201ENST00000364788 107 ntBASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 RNU7-85P-201ENST00000458851 63 ntBASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 RNU2-27P-201ENST00000516185 142 ntBASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 AC008011.1-201ENST00000545989 227 ntBASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 MIR4444-1-201ENST00000581696 74 ntBASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 MIR5195-201ENST00000583555 115 ntBASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 MIR4444-2-201ENST00000584390 74 ntBASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 AL355297.2-201ENST00000604792 129 ntBASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 AC034229.5-201ENST00000624258 185 ntBASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS9D1Q9Y2B5 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 HSBP1P2-201ENST00000299671 229 ntBASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 MIR452-201ENST00000385020 85 ntBASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 MIR136-201ENST00000385207 82 ntBASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 U8.16-201ENST00000391279 133 ntBASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 AC093423.1-201ENST00000440817 142 ntBASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 AC006539.3-201ENST00000454258 129 ntBASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 MIR5047-201ENST00000579212 100 ntBASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 U6.98-201ENST00000637157 84 ntBASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 MIR7515-201ENST00000637837 67 ntBASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS9D1Q9Y2B5 SNORA71.3-201ENST00000362582 128 ntBASIC3.6□□□□□ -1.83
VPS9D1Q9Y2B5 SNORA62.3-201ENST00000365110 153 ntBASIC3.6□□□□□ -1.83
VPS9D1Q9Y2B5 Y_RNA.596-201ENST00000410462 109 ntBASIC3.6□□□□□ -1.83
VPS9D1Q9Y2B5 ARF4P2-201ENST00000430209 526 ntBASIC3.6□□□□□ -1.83
VPS9D1Q9Y2B5 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS9D1Q9Y2B5 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC3.6□□□□□ -1.83
VPS9D1Q9Y2B5 MIR664A-201ENST00000626086 82 ntBASIC3.6□□□□□ -1.83
VPS9D1Q9Y2B5 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms