Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MIR548M-201ENST00000408260 86 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 AC074198.2-201ENST00000508153 258 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-1219P-201ENST00000516143 112 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 SNORD77.4-201ENST00000516158 81 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 RNU1-41P-201ENST00000516161 162 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 RNU1-48P-201ENST00000516400 162 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 AC109810.1-201ENST00000534066 224 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 AC108706.1-201ENST00000611053 297 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 AC027279.3-201ENST00000625055 122 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 snoU2-30.1-201ENST00000365012 70 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 SNORA12.1-201ENST00000390873 148 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 SNORA26-201ENST00000391286 122 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 SNORA79-201ENST00000408376 140 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 HMGN2P32-201ENST00000444648 269 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 NDUFA4P2-201ENST00000489989 244 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 AC005840.1-201ENST00000498412 377 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 MRPS17P9-201ENST00000511924 393 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 RNA5SP182-201ENST00000516064 82 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 AC022254.1-201ENST00000567857 235 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 MIR3618-201ENST00000580330 88 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 MIR4713-201ENST00000582691 75 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 AL513423.1-201ENST00000621695 132 ntBASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.08□□□□□ -2.08
LIMCH1Q9UPQ0 MIR802-201ENST00000390235 94 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 RNU4-43P-201ENST00000410628 137 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 PGBD4P5-201ENST00000445958 426 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 AL121914.1-201ENST00000450188 156 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 snoU13.26-201ENST00000459452 105 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 CYCTP-201ENST00000504253 315 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-1299P-201ENST00000516316 100 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 RNA5SP153-201ENST00000516498 76 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 AL160236.1-201ENST00000556317 195 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 MIR4299-201ENST00000577899 72 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 AC008507.4-201ENST00000585464 127 ntBASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
LIMCH1Q9UPQ0 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-661P-201ENST00000362409 107 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-414P-201ENST00000363705 104 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 Y_RNA.336-201ENST00000365307 109 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 Y_RNA.412-201ENST00000384001 104 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 Y_RNA.441-201ENST00000384123 112 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-394P-201ENST00000410735 107 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 RNU7-149P-201ENST00000516739 59 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 AC120024.3-201ENST00000603167 156 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 AC021506.2-201ENST00000612354 169 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 Pinc.1-201ENST00000616452 154 ntBASIC2.06□□□□□ -2.08
LIMCH1Q9UPQ0 SNORD14E-201ENST00000364009 85 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 Y_RNA.432-201ENST00000384087 111 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-746P-201ENST00000384112 109 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-424P-201ENST00000384367 105 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-163P-201ENST00000384396 106 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 MIR15B-201ENST00000385045 98 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 MIR676-201ENST00000390702 67 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 SNRPGP8-201ENST00000454064 226 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 SNORD45.4-201ENST00000516629 73 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 RNA5SP168-201ENST00000516642 112 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 MIR4431-201ENST00000579990 94 ntBASIC2.05□□□□□ -2.08
LIMCH1Q9UPQ0 MIRLET7C-201ENST00000362160 84 ntBASIC2.04□□□□□ -2.08
LIMCH1Q9UPQ0 SNORD50B-201ENST00000364995 70 ntBASIC2.04□□□□□ -2.08
LIMCH1Q9UPQ0 Y_RNA.357-201ENST00000365487 109 ntBASIC2.04□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-442P-201ENST00000383968 104 ntBASIC2.04□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-1135P-201ENST00000411083 103 ntBASIC2.04□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-255P-201ENST00000516957 105 ntBASIC2.04□□□□□ -2.08
LIMCH1Q9UPQ0 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
LIMCH1Q9UPQ0 MIR424-201ENST00000362227 98 ntBASIC2.03□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-1123P-201ENST00000362347 106 ntBASIC2.03□□□□□ -2.08
LIMCH1Q9UPQ0 RNU6-833P-201ENST00000363486 107 ntBASIC2.03□□□□□ -2.08
LIMCH1Q9UPQ0 SNORD45.3-201ENST00000363836 72 ntBASIC2.03□□□□□ -2.08
LIMCH1Q9UPQ0 U8.16-201ENST00000391279 133 ntBASIC2.03□□□□□ -2.08
LIMCH1Q9UPQ0 Y_RNA.622-201ENST00000411091 108 ntBASIC2.03□□□□□ -2.08
LIMCH1Q9UPQ0 CALM2P4-201ENST00000430810 426 ntBASIC2.03□□□□□ -2.08
LIMCH1Q9UPQ0 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.03□□□□□ -2.08
LIMCH1Q9UPQ0 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
LIMCH1Q9UPQ0 MIR3144-201ENST00000579460 79 ntBASIC2.03□□□□□ -2.08
LIMCH1Q9UPQ0 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC2.03□□□□□ -2.09
LIMCH1Q9UPQ0 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 MIR660-201ENST00000385235 97 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 MIR891A-201ENST00000401237 79 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 RNU2-70P-201ENST00000410718 179 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 JTBP1-201ENST00000441314 247 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 AC099513.1-201ENST00000490423 301 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 AC114811.1-201ENST00000507207 168 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 RNU7-12P-201ENST00000516030 62 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 RNU6-197P-201ENST00000516680 100 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 AC012493.3-201ENST00000604494 112 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 AC104465.1-201ENST00000611365 139 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 AC021753.1-201ENST00000635724 168 ntBASIC2.02□□□□□ -2.09
LIMCH1Q9UPQ0 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms