Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 RNU1-23P-201ENST00000363361 144 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 SNORD115-16-201ENST00000363887 82 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 Y_RNA.242-201ENST00000364473 110 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 SNORD115-1-201ENST00000364961 82 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 SNORD115-35-201ENST00000365122 82 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 Y_RNA.507-201ENST00000384500 99 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 RNU6-991P-201ENST00000516168 107 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 AC107016.2-201ENST00000547968 190 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 MIR4513-201ENST00000581077 86 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 AC006023.1-201ENST00000603944 259 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 MIR203B-201ENST00000636080 86 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.36□□□□□ -1.87
TRERF1Q96PN7 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
TRERF1Q96PN7 snoU2-30.2-201ENST00000362805 70 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 RNU6-363P-201ENST00000362895 105 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 RNU6-60P-201ENST00000364792 103 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 RNA5SP274-201ENST00000410484 108 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 RNU6-733P-201ENST00000410759 104 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 AC123900.1-201ENST00000420390 96 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 AL512326.2-201ENST00000426359 151 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 AC105272.1-201ENST00000438604 198 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.35□□□□□ -1.87
TRERF1Q96PN7 RNU7-171P-201ENST00000459581 62 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 SNORA31.4-201ENST00000516049 129 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 SNORA18.7-201ENST00000516910 131 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 SCARNA11.3-201ENST00000517276 130 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 AC096644.4-201ENST00000563417 2912 ntBASIC3.35□□□□□ -1.87
TRERF1Q96PN7 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.34□□□□□ -1.87
TRERF1Q96PN7 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
TRERF1Q96PN7 Y_RNA.332-201ENST00000365271 113 ntBASIC3.34□□□□□ -1.87
TRERF1Q96PN7 SNORA9.2-201ENST00000365361 133 ntBASIC3.34□□□□□ -1.87
TRERF1Q96PN7 Y_RNA.454-201ENST00000384224 113 ntBASIC3.34□□□□□ -1.87
TRERF1Q96PN7 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
TRERF1Q96PN7 Y_RNA.714-201ENST00000517065 90 ntBASIC3.34□□□□□ -1.87
TRERF1Q96PN7 AP003484.1-201ENST00000530974 250 ntBASIC3.34□□□□□ -1.87
TRERF1Q96PN7 RPL12P50-201ENST00000603116 116 ntBASIC3.34□□□□□ -1.87
TRERF1Q96PN7 AC064859.1-201ENST00000624741 174 ntBASIC3.34□□□□□ -1.87
TRERF1Q96PN7 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.33□□□□□ -1.88
TRERF1Q96PN7 RNU6-661P-201ENST00000362409 107 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 SNORD115-19-201ENST00000363098 82 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 SNORD68-201ENST00000363214 84 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 SNORD115-18-201ENST00000363293 82 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 RNU4-67P-201ENST00000364569 141 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 SNORD115-17-201ENST00000364612 82 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 RNU6-442P-201ENST00000383968 104 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 RNU6-546P-201ENST00000383991 107 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 RNU6-409P-201ENST00000384114 104 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 SNORD116-22-201ENST00000384430 92 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 MRPL35P3-201ENST00000421557 364 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 SNX2P2-201ENST00000424553 323 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 AC099677.2-201ENST00000436385 175 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 AL049830.1-201ENST00000468034 425 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 AP004217.1-201ENST00000480579 346 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 RPS23P4-201ENST00000487908 423 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 MIR4672-201ENST00000583126 81 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.33□□□□□ -1.88
TRERF1Q96PN7 AC092435.3-201ENST00000565538 3654 ntBASIC3.33□□□□□ -1.88
TRERF1Q96PN7 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
TRERF1Q96PN7 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.32□□□□□ -1.88
TRERF1Q96PN7 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
TRERF1Q96PN7 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.32□□□□□ -1.88
TRERF1Q96PN7 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
TRERF1Q96PN7 MIR342-201ENST00000362212 99 ntBASIC3.32□□□□□ -1.88
TRERF1Q96PN7 SNORD14E-201ENST00000364009 85 ntBASIC3.32□□□□□ -1.88
TRERF1Q96PN7 SNORD21-201ENST00000383953 95 ntBASIC3.32□□□□□ -1.88
TRERF1Q96PN7 RNU6-679P-201ENST00000391003 106 ntBASIC3.32□□□□□ -1.88
TRERF1Q96PN7 RNA5SP144-201ENST00000410846 116 ntBASIC3.32□□□□□ -1.88
TRERF1Q96PN7 AC139453.2-201ENST00000487255 133 ntBASIC3.32□□□□□ -1.88
TRERF1Q96PN7 RNU6-1041P-201ENST00000516254 102 ntBASIC3.32□□□□□ -1.88
TRERF1Q96PN7 SCARNA3-201ENST00000517097 143 ntBASIC3.32□□□□□ -1.88
TRERF1Q96PN7 AL358944.1-201ENST00000528537 144 ntBASIC3.32□□□□□ -1.88
TRERF1Q96PN7 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRERF1Q96PN7 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.31□□□□□ -1.88
TRERF1Q96PN7 RNA5SP139-201ENST00000364340 117 ntBASIC3.31□□□□□ -1.88
TRERF1Q96PN7 Y_RNA.467-201ENST00000384297 102 ntBASIC3.31□□□□□ -1.88
TRERF1Q96PN7 RNU6-24P-201ENST00000384440 107 ntBASIC3.31□□□□□ -1.88
TRERF1Q96PN7 FO393413.1-201ENST00000402892 195 ntBASIC3.31□□□□□ -1.88
TRERF1Q96PN7 RN7SKP200-201ENST00000410564 320 ntBASIC3.31□□□□□ -1.88
TRERF1Q96PN7 AC087499.2-201ENST00000432861 149 ntBASIC3.31□□□□□ -1.88
TRERF1Q96PN7 AC004812.1-201ENST00000540773 146 ntBASIC3.31□□□□□ -1.88
TRERF1Q96PN7 RNU7-80P-201ENST00000459562 61 ntBASIC3.3□□□□□ -1.88
TRERF1Q96PN7 RN7SL633P-201ENST00000488974 297 ntBASIC3.3□□□□□ -1.88
TRERF1Q96PN7 AC023141.11-201ENST00000508864 202 ntBASIC3.3□□□□□ -1.88
TRERF1Q96PN7 MIR4319-201ENST00000577285 85 ntBASIC3.3□□□□□ -1.88
TRERF1Q96PN7 AC078899.2-201ENST00000595282 212 ntBASIC3.3□□□□□ -1.88
TRERF1Q96PN7 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.3□□□□□ -1.88
TRERF1Q96PN7 MIR338-201ENST00000636369 67 ntBASIC3.3□□□□□ -1.88
TRERF1Q96PN7 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.3□□□□□ -1.88
TRERF1Q96PN7 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.3□□□□□ -1.88
TRERF1Q96PN7 SNORA7.5-201ENST00000410672 110 ntBASIC3.29□□□□□ -1.88
TRERF1Q96PN7 Y_RNA.620-201ENST00000411009 88 ntBASIC3.29□□□□□ -1.88
TRERF1Q96PN7 SNORA31.26-201ENST00000517250 137 ntBASIC3.29□□□□□ -1.88
TRERF1Q96PN7 AC079600.2-201ENST00000550076 130 ntBASIC3.29□□□□□ -1.88
TRERF1Q96PN7 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC3.29□□□□□ -1.88
TRERF1Q96PN7 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.29□□□□□ -1.88
TRERF1Q96PN7 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
TRERF1Q96PN7 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
TRERF1Q96PN7 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
TRERF1Q96PN7 RNU6-1084P-201ENST00000362498 107 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms