Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC103810.9-201ENST00000606688 112 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SKA1Q96BD8 RNU4-90P-201ENST00000362773 141 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 Y_RNA.148-201ENST00000363557 117 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 RNU6-899P-201ENST00000363947 107 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 MIR613-201ENST00000385248 95 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 RNU6-308P-201ENST00000390957 107 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 NDUFA4P2-201ENST00000489989 244 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 RNU6-397P-201ENST00000516226 104 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 RNU6-191P-201ENST00000516295 94 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 RNU6-830P-201ENST00000516353 107 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 MIR151B-201ENST00000584249 96 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 AC008507.4-201ENST00000585464 127 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 Pinc.1-201ENST00000616452 154 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 MIR6788-201ENST00000618842 66 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 AC008133.2-201ENST00000624540 351 ntBASIC1.07□□□□□ -2.24
SKA1Q96BD8 RNU6-1048P-201ENST00000364054 107 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 RNU6-801P-201ENST00000364087 105 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 RNY1-201ENST00000364228 113 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 Y_RNA.370-201ENST00000365589 108 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 Y_RNA.466-201ENST00000384294 113 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 MIR1185-1-201ENST00000408598 86 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 Y_RNA.602-201ENST00000410535 92 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 RPS3AP1-201ENST00000413190 320 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 AC023449.1-201ENST00000454464 154 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 RPS29P1-201ENST00000465274 159 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.06□□□□□ -2.24
SKA1Q96BD8 RNU6-988P-201ENST00000519081 107 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 AC005357.1-201ENST00000588399 301 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 MIR4251-201ENST00000635819 61 ntBASIC1.06□□□□□ -2.24
SKA1Q96BD8 AC134026.1-201ENST00000623249 2239 ntBASIC1.05□□□□□ -2.24
SKA1Q96BD8 Y_RNA.136-201ENST00000363444 102 ntBASIC1.05□□□□□ -2.24
SKA1Q96BD8 Y_RNA.569-201ENST00000384749 103 ntBASIC1.05□□□□□ -2.24
SKA1Q96BD8 RNU6-823P-201ENST00000391042 103 ntBASIC1.05□□□□□ -2.24
SKA1Q96BD8 MTCO2P33-201ENST00000402100 465 ntBASIC1.05□□□□□ -2.24
SKA1Q96BD8 RNU2-14P-201ENST00000411053 191 ntBASIC1.05□□□□□ -2.24
SKA1Q96BD8 RNU2-64P-201ENST00000411315 191 ntBASIC1.05□□□□□ -2.24
SKA1Q96BD8 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.05□□□□□ -2.24
SKA1Q96BD8 AC211469.2-201ENST00000605461 205 ntBASIC1.05□□□□□ -2.24
SKA1Q96BD8 MIR6857-201ENST00000613267 93 ntBASIC1.05□□□□□ -2.24
SKA1Q96BD8 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.05□□□□□ -2.24
SKA1Q96BD8 Y_RNA.28-201ENST00000362554 111 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 RNU6-268P-201ENST00000364174 107 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 Y_RNA.813-201ENST00000364639 102 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 Y_RNA.389-201ENST00000383924 113 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 RNU6-144P-201ENST00000383951 107 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 Y_RNA.460-201ENST00000384255 102 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 SNORD115-46-201ENST00000390982 71 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 MIR1252-201ENST00000408861 65 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 MTND4LP30-201ENST00000454092 297 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 RN7SKP164-201ENST00000516138 266 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 ACA64.5-201ENST00000516207 127 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 RNU6-897P-201ENST00000517135 105 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 MIR548AR-201ENST00000582191 57 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 AL160413.1-201ENST00000622780 310 ntBASIC1.04□□□□□ -2.24
SKA1Q96BD8 Y_RNA.31-201ENST00000362574 102 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 RNU6-1187P-201ENST00000364771 110 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 Y_RNA.418-201ENST00000384029 102 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 Y_RNA.509-201ENST00000384506 99 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 SNORA26.5-201ENST00000391215 123 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 Y_RNA.645-201ENST00000391229 102 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 MIR1278-201ENST00000408753 81 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 PMCHL1-202ENST00000423102 261 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 SNRPGP14-201ENST00000435400 219 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.03□□□□□ -2.24
SKA1Q96BD8 Y_RNA.631-201ENST00000459607 101 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 RNU6-496P-201ENST00000516145 99 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 RNA5SP255-201ENST00000516370 107 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.03□□□□□ -2.24
SKA1Q96BD8 AC023827.1-201ENST00000569247 97 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 AC131055.1-201ENST00000584626 316 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 MIR6515-201ENST00000619843 57 ntBASIC1.03□□□□□ -2.24
SKA1Q96BD8 RNU6-1205P-201ENST00000363625 106 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 SNORA1.2-201ENST00000365189 134 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 Y_RNA.380-201ENST00000365663 111 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 U8.17-201ENST00000391292 132 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.02□□□□□ -2.25
SKA1Q96BD8 HSPE1P25-201ENST00000455484 251 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.02□□□□□ -2.25
SKA1Q96BD8 SNORA40.15-201ENST00000516884 107 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 AC109810.1-201ENST00000534066 224 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 AL512605.2-201ENST00000592972 256 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 C8orf59P2-201ENST00000603441 271 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 RAC1P9-201ENST00000604990 392 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 AC037487.3-201ENST00000606668 112 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 AC022709.1-201ENST00000615967 87 ntBASIC1.02□□□□□ -2.25
SKA1Q96BD8 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.01□□□□□ -2.25
SKA1Q96BD8 RNU6-450P-201ENST00000364654 107 ntBASIC1.01□□□□□ -2.25
SKA1Q96BD8 MIR608-201ENST00000384820 100 ntBASIC1.01□□□□□ -2.25
SKA1Q96BD8 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
SKA1Q96BD8 MIR548J-201ENST00000408833 112 ntBASIC1.01□□□□□ -2.25
SKA1Q96BD8 AC067940.1-201ENST00000458411 300 ntBASIC1.01□□□□□ -2.25
SKA1Q96BD8 SNORD11-201ENST00000459124 84 ntBASIC1.01□□□□□ -2.25
SKA1Q96BD8 RNU6-764P-201ENST00000516396 105 ntBASIC1.01□□□□□ -2.25
SKA1Q96BD8 RNU6-197P-201ENST00000516680 100 ntBASIC1.01□□□□□ -2.25
SKA1Q96BD8 SNORD114-21-201ENST00000606412 72 ntBASIC1.01□□□□□ -2.25
SKA1Q96BD8 AC006441.5-201ENST00000612680 209 ntBASIC1.01□□□□□ -2.25
SKA1Q96BD8 AC015726.2-201ENST00000620112 122 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms