Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.57□□□□□ -2
BRF1Q92994 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.57□□□□□ -2
BRF1Q92994 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.57□□□□□ -2
BRF1Q92994 AF228730.3-201ENST00000436691 102 ntBASIC2.57□□□□□ -2
BRF1Q92994 RNA5SP82-201ENST00000516707 92 ntBASIC2.57□□□□□ -2
BRF1Q92994 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.57□□□□□ -2
BRF1Q92994 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
BRF1Q92994 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
BRF1Q92994 RNU6-1084P-201ENST00000362498 107 ntBASIC2.56□□□□□ -2
BRF1Q92994 SNORD14E-201ENST00000364009 85 ntBASIC2.56□□□□□ -2
BRF1Q92994 RNU6-309P-201ENST00000364573 106 ntBASIC2.56□□□□□ -2
BRF1Q92994 MIR802-201ENST00000390235 94 ntBASIC2.56□□□□□ -2
BRF1Q92994 SNORD77.3-201ENST00000391113 65 ntBASIC2.56□□□□□ -2
BRF1Q92994 UBE2DNL-203ENST00000474922 222 ntBASIC2.56□□□□□ -2
BRF1Q92994 RNA5SP236-201ENST00000516169 116 ntBASIC2.56□□□□□ -2
BRF1Q92994 SNORD45.4-201ENST00000516629 73 ntBASIC2.56□□□□□ -2
BRF1Q92994 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.56□□□□□ -2
BRF1Q92994 SNORA28-201ENST00000606769 126 ntBASIC2.56□□□□□ -2
BRF1Q92994 MIR3914-2-201ENST00000637339 95 ntBASIC2.56□□□□□ -2
BRF1Q92994 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
BRF1Q92994 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
BRF1Q92994 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
BRF1Q92994 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.55□□□□□ -2
BRF1Q92994 RNU6-268P-201ENST00000364174 107 ntBASIC2.55□□□□□ -2
BRF1Q92994 RNU6-647P-201ENST00000364243 107 ntBASIC2.55□□□□□ -2
BRF1Q92994 SNORA63D-201ENST00000364359 132 ntBASIC2.55□□□□□ -2
BRF1Q92994 MIR23A-201ENST00000385245 73 ntBASIC2.55□□□□□ -2
BRF1Q92994 Y_RNA.617-201ENST00000410920 90 ntBASIC2.55□□□□□ -2
BRF1Q92994 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.55□□□□□ -2
BRF1Q92994 RNU6-772P-201ENST00000516042 105 ntBASIC2.55□□□□□ -2
BRF1Q92994 RNA5SP200-201ENST00000516360 103 ntBASIC2.55□□□□□ -2
BRF1Q92994 MIR5094-201ENST00000578766 85 ntBASIC2.55□□□□□ -2
BRF1Q92994 AC245060.5-201ENST00000610778 3293 ntBASIC2.54□□□□□ -2
BRF1Q92994 Y_RNA.410-201ENST00000383992 113 ntBASIC2.54□□□□□ -2
BRF1Q92994 RNU6-1056P-201ENST00000383996 107 ntBASIC2.54□□□□□ -2
BRF1Q92994 Y_RNA.525-201ENST00000384570 113 ntBASIC2.54□□□□□ -2
BRF1Q92994 RNU6-950P-201ENST00000384651 107 ntBASIC2.54□□□□□ -2
BRF1Q92994 MIR597-201ENST00000384968 97 ntBASIC2.54□□□□□ -2
BRF1Q92994 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.54□□□□□ -2
BRF1Q92994 HMGN2P32-201ENST00000444648 269 ntBASIC2.54□□□□□ -2
BRF1Q92994 SNORA31.10-201ENST00000516482 106 ntBASIC2.54□□□□□ -2
BRF1Q92994 SCARNA16.3-201ENST00000516595 184 ntBASIC2.54□□□□□ -2
BRF1Q92994 MIR5002-201ENST00000584713 97 ntBASIC2.54□□□□□ -2
BRF1Q92994 AC134878.1-201ENST00000619901 243 ntBASIC2.54□□□□□ -2
BRF1Q92994 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.54□□□□□ -2
BRF1Q92994 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
BRF1Q92994 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
BRF1Q92994 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.54□□□□□ -2
BRF1Q92994 MTND5P32-201ENST00000560711 1802 ntBASIC2.54□□□□□ -2
BRF1Q92994 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.53□□□□□ -2
BRF1Q92994 MIRLET7C-201ENST00000362160 84 ntBASIC2.53□□□□□ -2
BRF1Q92994 SNORA48.1-201ENST00000390879 135 ntBASIC2.53□□□□□ -2
BRF1Q92994 MIR548O-201ENST00000408583 114 ntBASIC2.53□□□□□ -2
BRF1Q92994 AC007064.1-201ENST00000412238 351 ntBASIC2.53□□□□□ -2
BRF1Q92994 HMGN2P3-201ENST00000433603 273 ntBASIC2.53□□□□□ -2
BRF1Q92994 HMGN2P5-201ENST00000436882 273 ntBASIC2.53□□□□□ -2
BRF1Q92994 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.53□□□□□ -2
BRF1Q92994 Y_RNA.651-201ENST00000459380 103 ntBASIC2.53□□□□□ -2
BRF1Q92994 RNU6-919P-201ENST00000516731 104 ntBASIC2.53□□□□□ -2
BRF1Q92994 SCARNA15-202ENST00000516881 127 ntBASIC2.53□□□□□ -2
BRF1Q92994 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.53□□□□□ -2
BRF1Q92994 MIR5197-201ENST00000583721 112 ntBASIC2.53□□□□□ -2
BRF1Q92994 AL022345.2-201ENST00000606307 135 ntBASIC2.53□□□□□ -2
BRF1Q92994 U6.95-201ENST00000636931 70 ntBASIC2.53□□□□□ -2
BRF1Q92994 AL442644.1-201ENST00000454390 3105 ntBASIC2.53□□□□□ -2.01
BRF1Q92994 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
BRF1Q92994 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
BRF1Q92994 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
BRF1Q92994 RNU6-508P-201ENST00000363231 103 ntBASIC2.52□□□□□ -2.01
BRF1Q92994 RNU6-1325P-201ENST00000364905 105 ntBASIC2.52□□□□□ -2.01
BRF1Q92994 RN7SKP200-201ENST00000410564 320 ntBASIC2.52□□□□□ -2.01
BRF1Q92994 RNU6-1064P-201ENST00000410626 104 ntBASIC2.52□□□□□ -2.01
BRF1Q92994 STAG3L5P-204ENST00000443759 179 ntBASIC2.52□□□□□ -2.01
BRF1Q92994 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.52□□□□□ -2.01
BRF1Q92994 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.52□□□□□ -2.01
BRF1Q92994 AC008413.1-201ENST00000511864 177 ntBASIC2.52□□□□□ -2.01
BRF1Q92994 RNU6-113P-201ENST00000516653 101 ntBASIC2.52□□□□□ -2.01
BRF1Q92994 MIR6132-201ENST00000622083 109 ntBASIC2.52□□□□□ -2.01
BRF1Q92994 AC027279.3-201ENST00000625055 122 ntBASIC2.52□□□□□ -2.01
BRF1Q92994 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
BRF1Q92994 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
BRF1Q92994 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
BRF1Q92994 SNORA40.5-201ENST00000391061 128 ntBASIC2.51□□□□□ -2.01
BRF1Q92994 SNORA48.3-201ENST00000391081 134 ntBASIC2.51□□□□□ -2.01
BRF1Q92994 CYCTP-201ENST00000504253 315 ntBASIC2.51□□□□□ -2.01
BRF1Q92994 RNU7-25P-201ENST00000516544 62 ntBASIC2.51□□□□□ -2.01
BRF1Q92994 RNU6-1149P-201ENST00000516810 97 ntBASIC2.51□□□□□ -2.01
BRF1Q92994 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
BRF1Q92994 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.5□□□□□ -2.01
BRF1Q92994 SNORD115-28-201ENST00000363931 81 ntBASIC2.5□□□□□ -2.01
BRF1Q92994 SNORD58C-201ENST00000365223 64 ntBASIC2.5□□□□□ -2.01
BRF1Q92994 RNU6-1144P-201ENST00000384247 104 ntBASIC2.5□□□□□ -2.01
BRF1Q92994 Y_RNA.547-201ENST00000384654 119 ntBASIC2.5□□□□□ -2.01
BRF1Q92994 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.5□□□□□ -2.01
BRF1Q92994 AL035461.1-201ENST00000421490 332 ntBASIC2.5□□□□□ -2.01
BRF1Q92994 AL021397.1-201ENST00000451806 248 ntBASIC2.5□□□□□ -2.01
BRF1Q92994 RNVU1-2-201ENST00000516326 135 ntBASIC2.5□□□□□ -2.01
BRF1Q92994 AC133485.4-201ENST00000561835 220 ntBASIC2.5□□□□□ -2.01
BRF1Q92994 SUB1P4-201ENST00000566062 339 ntBASIC2.5□□□□□ -2.01
BRF1Q92994 AC138907.4-201ENST00000570107 226 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 170.4 ms