Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MIR3670-2-201ENST00000582974 65 ntBASIC2.53□□□□□ -2
RNF4P78317 MIR3670-1-201ENST00000584160 65 ntBASIC2.53□□□□□ -2
RNF4P78317 MIR3670-3-201ENST00000584855 65 ntBASIC2.53□□□□□ -2
RNF4P78317 SNORD14A-201ENST00000606526 91 ntBASIC2.53□□□□□ -2
RNF4P78317 MIR3670-4-201ENST00000612260 65 ntBASIC2.53□□□□□ -2
RNF4P78317 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.53□□□□□ -2
RNF4P78317 SCARNA15.3-201ENST00000626315 122 ntBASIC2.53□□□□□ -2
RNF4P78317 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.53□□□□□ -2
RNF4P78317 SCARNA4.1-201ENST00000628597 123 ntBASIC2.53□□□□□ -2
RNF4P78317 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
RNF4P78317 AL355596.1-201ENST00000565399 3996 ntBASIC2.53□□□□□ -2
RNF4P78317 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
RNF4P78317 SNORA25.6-201ENST00000364121 118 ntBASIC2.52□□□□□ -2.01
RNF4P78317 SNORA63D-201ENST00000364359 132 ntBASIC2.52□□□□□ -2.01
RNF4P78317 SNORD38C-201ENST00000384381 69 ntBASIC2.52□□□□□ -2.01
RNF4P78317 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
RNF4P78317 RN7SKP200-201ENST00000410564 320 ntBASIC2.52□□□□□ -2.01
RNF4P78317 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.52□□□□□ -2.01
RNF4P78317 RNU6-113P-201ENST00000516653 101 ntBASIC2.52□□□□□ -2.01
RNF4P78317 SNORA18.7-201ENST00000516910 131 ntBASIC2.52□□□□□ -2.01
RNF4P78317 RNU7-70P-201ENST00000516941 66 ntBASIC2.52□□□□□ -2.01
RNF4P78317 AP003484.1-201ENST00000530974 250 ntBASIC2.52□□□□□ -2.01
RNF4P78317 RNU6-690P-201ENST00000365242 106 ntBASIC2.51□□□□□ -2.01
RNF4P78317 Y_RNA.440-201ENST00000384120 114 ntBASIC2.51□□□□□ -2.01
RNF4P78317 RNU6-880P-201ENST00000384526 107 ntBASIC2.51□□□□□ -2.01
RNF4P78317 AL034345.1-201ENST00000407768 123 ntBASIC2.51□□□□□ -2.01
RNF4P78317 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.51□□□□□ -2.01
RNF4P78317 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.51□□□□□ -2.01
RNF4P78317 SNORD109B-201ENST00000458961 67 ntBASIC2.51□□□□□ -2.01
RNF4P78317 SNORD109A-201ENST00000459128 67 ntBASIC2.51□□□□□ -2.01
RNF4P78317 RNU7-34P-201ENST00000459394 64 ntBASIC2.51□□□□□ -2.01
RNF4P78317 RNA5SP168-201ENST00000516642 112 ntBASIC2.51□□□□□ -2.01
RNF4P78317 RNA5SP437-201ENST00000517249 129 ntBASIC2.51□□□□□ -2.01
RNF4P78317 MIR4319-201ENST00000577285 85 ntBASIC2.51□□□□□ -2.01
RNF4P78317 RNU6-424P-201ENST00000384367 105 ntBASIC2.5□□□□□ -2.01
RNF4P78317 Y_RNA.510-201ENST00000384511 114 ntBASIC2.5□□□□□ -2.01
RNF4P78317 RNU2-7P-201ENST00000410794 178 ntBASIC2.5□□□□□ -2.01
RNF4P78317 RNA5SP501-201ENST00000410990 112 ntBASIC2.5□□□□□ -2.01
RNF4P78317 RNA5SP184-201ENST00000411071 108 ntBASIC2.5□□□□□ -2.01
RNF4P78317 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.5□□□□□ -2.01
RNF4P78317 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.5□□□□□ -2.01
RNF4P78317 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
RNF4P78317 ZNF720P1-201ENST00000562403 1939 ntBASIC2.5□□□□□ -2.01
RNF4P78317 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
RNF4P78317 AC062016.1-201ENST00000355719 319 ntBASIC2.49□□□□□ -2.01
RNF4P78317 MIR342-201ENST00000362212 99 ntBASIC2.49□□□□□ -2.01
RNF4P78317 RNU6-859P-201ENST00000362728 107 ntBASIC2.49□□□□□ -2.01
RNF4P78317 RNU6-755P-201ENST00000364400 103 ntBASIC2.49□□□□□ -2.01
RNF4P78317 SNORA48.1-201ENST00000390879 135 ntBASIC2.49□□□□□ -2.01
RNF4P78317 RNA5SP270-201ENST00000411361 118 ntBASIC2.49□□□□□ -2.01
RNF4P78317 SNX2P2-201ENST00000424553 323 ntBASIC2.49□□□□□ -2.01
RNF4P78317 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.49□□□□□ -2.01
RNF4P78317 RPL23AP63-201ENST00000498752 471 ntBASIC2.49□□□□□ -2.01
RNF4P78317 RNA5SP82-201ENST00000516707 92 ntBASIC2.49□□□□□ -2.01
RNF4P78317 AL596211.1-201ENST00000569873 2277 ntBASIC2.49□□□□□ -2.01
RNF4P78317 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.48□□□□□ -2.01
RNF4P78317 RNU1-133P-201ENST00000364867 167 ntBASIC2.48□□□□□ -2.01
RNF4P78317 Y_RNA.351-201ENST00000365436 96 ntBASIC2.48□□□□□ -2.01
RNF4P78317 MIR520A-201ENST00000384862 85 ntBASIC2.48□□□□□ -2.01
RNF4P78317 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
RNF4P78317 RPS26P48-201ENST00000491713 339 ntBASIC2.48□□□□□ -2.01
RNF4P78317 RNU7-12P-201ENST00000516030 62 ntBASIC2.48□□□□□ -2.01
RNF4P78317 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.48□□□□□ -2.01
RNF4P78317 AC027279.3-201ENST00000625055 122 ntBASIC2.48□□□□□ -2.01
RNF4P78317 AC008555.8-201ENST00000623602 2168 ntBASIC2.48□□□□□ -2.01
RNF4P78317 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
RNF4P78317 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
RNF4P78317 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
RNF4P78317 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
RNF4P78317 RNU6-950P-201ENST00000384651 107 ntBASIC2.47□□□□□ -2.01
RNF4P78317 RNU6-1031P-201ENST00000384773 107 ntBASIC2.47□□□□□ -2.01
RNF4P78317 MIR516B2-201ENST00000385190 85 ntBASIC2.47□□□□□ -2.01
RNF4P78317 AC015922.2-201ENST00000435593 184 ntBASIC2.47□□□□□ -2.01
RNF4P78317 AC087499.4-201ENST00000448505 178 ntBASIC2.47□□□□□ -2.01
RNF4P78317 AC011753.1-201ENST00000451001 220 ntBASIC2.47□□□□□ -2.01
RNF4P78317 AC108938.1-201ENST00000451204 136 ntBASIC2.47□□□□□ -2.01
RNF4P78317 AC093850.1-201ENST00000454121 251 ntBASIC2.47□□□□□ -2.01
RNF4P78317 RNY4P20-201ENST00000516678 93 ntBASIC2.47□□□□□ -2.01
RNF4P78317 SUB1P4-201ENST00000566062 339 ntBASIC2.47□□□□□ -2.01
RNF4P78317 AC091932.4-201ENST00000623386 200 ntBASIC2.47□□□□□ -2.01
RNF4P78317 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
RNF4P78317 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
RNF4P78317 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.47□□□□□ -2.01
RNF4P78317 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
RNF4P78317 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
RNF4P78317 RNU6-349P-201ENST00000362402 107 ntBASIC2.46□□□□□ -2.02
RNF4P78317 Y_RNA.241-201ENST00000364470 117 ntBASIC2.46□□□□□ -2.02
RNF4P78317 RNU4-16P-201ENST00000364737 141 ntBASIC2.46□□□□□ -2.02
RNF4P78317 RNU6-147P-201ENST00000383983 107 ntBASIC2.46□□□□□ -2.02
RNF4P78317 RNY1P6-201ENST00000384193 109 ntBASIC2.46□□□□□ -2.02
RNF4P78317 MIR196B-201ENST00000384852 84 ntBASIC2.46□□□□□ -2.02
RNF4P78317 MIR570-201ENST00000384917 97 ntBASIC2.46□□□□□ -2.02
RNF4P78317 MIR181B1-201ENST00000385240 110 ntBASIC2.46□□□□□ -2.02
RNF4P78317 RNA5SP136-201ENST00000410906 107 ntBASIC2.46□□□□□ -2.02
RNF4P78317 RNU7-181P-201ENST00000517234 74 ntBASIC2.46□□□□□ -2.02
RNF4P78317 MIR4635-201ENST00000583759 79 ntBASIC2.46□□□□□ -2.02
RNF4P78317 AC021443.1-201ENST00000604478 211 ntBASIC2.46□□□□□ -2.02
RNF4P78317 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
RNF4P78317 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
RNF4P78317 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 261.4 ms