Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR4419B-201ENST00000577260 68 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 MIR4744-201ENST00000581563 82 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 MIR4762-201ENST00000585261 75 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 AC008507.4-201ENST00000585464 127 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 WWP1P1-201ENST00000466609 2769 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
HOXA1P49639 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.46□□□□□ -2.18
HOXA1P49639 Y_RNA.91-201ENST00000363042 107 ntBASIC1.46□□□□□ -2.18
HOXA1P49639 SNORD45.3-201ENST00000363836 72 ntBASIC1.46□□□□□ -2.18
HOXA1P49639 Y_RNA.486-201ENST00000384398 107 ntBASIC1.46□□□□□ -2.18
HOXA1P49639 MIR194-1-201ENST00000384892 85 ntBASIC1.46□□□□□ -2.18
HOXA1P49639 RNU6-578P-201ENST00000390980 103 ntBASIC1.46□□□□□ -2.18
HOXA1P49639 RNA5SP496-201ENST00000391240 109 ntBASIC1.46□□□□□ -2.18
HOXA1P49639 RNU7-28P-201ENST00000516759 62 ntBASIC1.46□□□□□ -2.18
HOXA1P49639 AC109810.1-201ENST00000534066 224 ntBASIC1.46□□□□□ -2.18
HOXA1P49639 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.46□□□□□ -2.18
HOXA1P49639 Pinc.1-201ENST00000616452 154 ntBASIC1.46□□□□□ -2.18
HOXA1P49639 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
HOXA1P49639 RNU6-457P-201ENST00000363999 107 ntBASIC1.45□□□□□ -2.18
HOXA1P49639 MIR516B2-201ENST00000385190 85 ntBASIC1.45□□□□□ -2.18
HOXA1P49639 MIR660-201ENST00000385235 97 ntBASIC1.45□□□□□ -2.18
HOXA1P49639 MIR1267-201ENST00000408723 78 ntBASIC1.45□□□□□ -2.18
HOXA1P49639 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.45□□□□□ -2.18
HOXA1P49639 JTBP1-201ENST00000441314 247 ntBASIC1.45□□□□□ -2.18
HOXA1P49639 AL121914.1-201ENST00000450188 156 ntBASIC1.45□□□□□ -2.18
HOXA1P49639 RNU7-120P-201ENST00000459334 63 ntBASIC1.45□□□□□ -2.18
HOXA1P49639 SNORD77.4-201ENST00000516158 81 ntBASIC1.45□□□□□ -2.18
HOXA1P49639 SNORA77B-201ENST00000578179 125 ntBASIC1.45□□□□□ -2.18
HOXA1P49639 AL391903.3-201ENST00000612158 163 ntBASIC1.45□□□□□ -2.18
HOXA1P49639 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.45□□□□□ -2.18
HOXA1P49639 MIR424-201ENST00000362227 98 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 RNU6-661P-201ENST00000362409 107 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 SNORD14E-201ENST00000364009 85 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 snoU2-30.1-201ENST00000365012 70 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 Y_RNA.785-201ENST00000384290 109 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 MIR526A1-201ENST00000384897 85 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 MIR15B-201ENST00000385045 98 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 AC004965.1-201ENST00000413033 213 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 AL161935.2-201ENST00000414627 60 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.44□□□□□ -2.18
HOXA1P49639 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.44□□□□□ -2.18
HOXA1P49639 CYCTP-201ENST00000504253 315 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 AC008834.1-201ENST00000511612 175 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 Y_RNA.666-201ENST00000516187 112 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.44□□□□□ -2.18
HOXA1P49639 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.44□□□□□ -2.18
HOXA1P49639 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
HOXA1P49639 RNA5SP259-201ENST00000365541 109 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 RNU6-484P-201ENST00000384016 107 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 MIR802-201ENST00000390235 94 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 RNU6-955P-201ENST00000410497 104 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 RNU5E-9P-201ENST00000411164 104 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 RNU2-64P-201ENST00000411315 191 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 CYCSP49-201ENST00000420810 319 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 SEPT7P4-201ENST00000437076 306 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 HSPE1P24-201ENST00000450782 238 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 AC023449.1-201ENST00000454464 154 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 RNU6-182P-201ENST00000516970 105 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 MIR5688-201ENST00000580619 83 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.43□□□□□ -2.18
HOXA1P49639 MIR8074-201ENST00000615081 81 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 AL513423.1-201ENST00000621695 132 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 MIR8063-201ENST00000621930 81 ntBASIC1.43□□□□□ -2.18
HOXA1P49639 RNU6-103P-201ENST00000363686 107 ntBASIC1.42□□□□□ -2.18
HOXA1P49639 RNU6-275P-201ENST00000364910 107 ntBASIC1.42□□□□□ -2.18
HOXA1P49639 MIR513A1-201ENST00000385138 129 ntBASIC1.42□□□□□ -2.18
HOXA1P49639 PCNPP3-201ENST00000393579 471 ntBASIC1.42□□□□□ -2.18
HOXA1P49639 MIR891A-201ENST00000401237 79 ntBASIC1.42□□□□□ -2.18
HOXA1P49639 AC092991.1-201ENST00000477176 376 ntBASIC1.42□□□□□ -2.18
HOXA1P49639 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.42□□□□□ -2.18
HOXA1P49639 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.42□□□□□ -2.18
HOXA1P49639 MIR3198-2-201ENST00000577868 80 ntBASIC1.42□□□□□ -2.18
HOXA1P49639 AC072026.1-201ENST00000605023 201 ntBASIC1.42□□□□□ -2.18
HOXA1P49639 FTX_2.1-201ENST00000618816 94 ntBASIC1.42□□□□□ -2.18
HOXA1P49639 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.42□□□□□ -2.18
HOXA1P49639 Y_RNA.121-201ENST00000363309 113 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 RNU6-268P-201ENST00000364174 107 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 RNU6-728P-201ENST00000365375 104 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 RNU6-1336P-201ENST00000383886 109 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 Y_RNA.432-201ENST00000384087 111 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 Y_RNA.435-201ENST00000384095 112 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 MIR934-201ENST00000401241 83 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 AC006461.1-201ENST00000412637 326 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 SNRPGP14-201ENST00000435400 219 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 AC003989.2-201ENST00000440224 169 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 RNU6-917P-201ENST00000516294 104 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 RNU6-1299P-201ENST00000516316 100 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 Y_RNA.700-201ENST00000516806 100 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 RNU6-1270P-201ENST00000517128 108 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 AC019176.1-201ENST00000518519 225 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 AC090142.3-201ENST00000519012 385 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 AL160236.1-201ENST00000556317 195 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.41□□□□□ -2.18
HOXA1P49639 AL161722.3-201ENST00000605789 2983 ntBASIC1.41□□□□□ -2.18
HOXA1P49639 SNORD114-1-201ENST00000362705 72 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 Y_RNA.75-201ENST00000362927 97 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 RNU6-833P-201ENST00000363486 107 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 Y_RNA.634-201ENST00000364811 113 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 RNU6-1138P-201ENST00000365359 106 ntBASIC1.4□□□□□ -2.19
HOXA1P49639 RNU6-442P-201ENST00000383968 104 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 165 ms